[gmx-users] converting .xpm to .eps

[Carsten Kutzner]

On 12/20/2013 10:09 AM, bipin singh wrote:
> Not sure, might be something going wrong due to large dimension of your
> matrix. Which Gromacs version you are using. Others may provide some clues.
I just tried with a 483 x 486 matrix which went smoothly.
You could try to narrow down the problem.
See whether it works with other input data for example.
Check whether it works on another machine.

Carsten
>
>
> On Fri, Dec 20, 2013 at 10:04 AM, Nidhi Jatana <nidhijatana at bic-svc.ac.in>wrote:
>
>> Dear Sir/Madam
>> Please find attached the file containing the error.
>>
>> Thanking you
>>
>> Regards
>> --
>> Nidhi Jatana
>> Senior Research Fellow
>> Bioinformatics Center
>> Sri Venkateswara College
>> (University of Delhi)
>> Dhaula Kuan
>> New Delhi-110021.
>>
>>
>>
>> On Thu, Dec 19, 2013 at 7:44 PM, Carsten Kutzner <ckutzne at gwdg.de> wrote:
>>
>>> On 12/19/2013 12:53 PM, Nidhi Jatana wrote:
>>>
>>>> Dear Sir/Madam
>>>> I generated the atomic density plot using g_densmap by giving the
>>>> following
>>>> command:
>>>> g_densmap -f *.xtc -s *.pdb -n *.ndx -o *.xpm
>>>>
>>>> The calculation completed successfully but when I am trying to convert
>>>> .xpm
>>>> file to .eps file using xpm2ps command, its giving error and aborts.
>>>>
>>> What is the error message?
>>>
>>> If I use your set of commands with Gromacs 4.6.4, I can successfully
>> create
>>> an EPS file.
>>>
>>> Carsten
>>>
>>>
>>>> xpm2ps -f *.xpm -o *.eps -rainbow red -xpm *.xpm
>>>>
>>>> I have tried many options with setting -bx and -by but of no help. I
>> also
>>>> tried taking the .m2p file but the problem persist. Please find attached
>>>> the .m2p file for reference. Please help me with this.
>>>>
>>>> Thanking you
>>>>
>>>> Regards
>>>>    --
>>>> Nidhi Jatana
>>>> Senior Research Fellow
>>>> Bioinformatics Center
>>>> Sri Venkateswara College
>>>> (University of Delhi)
>>>> Dhaula Kuan
>>>> New Delhi-110021.
>>>>
>>>>
>>>>
>>> --
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>