[gmx-users] converting .xpm to .eps

[Nidhi Jatana]

How do you fix the matrix size? Should I do it while generation of .xpm
file or while converting it to .eps and using which option?

Regards
Nidhi


On Fri, Dec 20, 2013 at 3:35 PM, Carsten Kutzner <ckutzne at gwdg.de> wrote:

> On 12/20/2013 10:09 AM, bipin singh wrote:
>
>> Not sure, might be something going wrong due to large dimension of your
>> matrix. Which Gromacs version you are using. Others may provide some
>> clues.
>>
> I just tried with a 483 x 486 matrix which went smoothly.
> You could try to narrow down the problem.
> See whether it works with other input data for example.
> Check whether it works on another machine.
>
> Carsten
>
>
>>
>> On Fri, Dec 20, 2013 at 10:04 AM, Nidhi Jatana <nidhijatana at bic-svc.ac.in
>> >wrote:
>>
>>  Dear Sir/Madam
>>> Please find attached the file containing the error.
>>>
>>> Thanking you
>>>
>>> Regards
>>> --
>>> Nidhi Jatana
>>> Senior Research Fellow
>>> Bioinformatics Center
>>> Sri Venkateswara College
>>> (University of Delhi)
>>> Dhaula Kuan
>>> New Delhi-110021.
>>>
>>>
>>>
>>> On Thu, Dec 19, 2013 at 7:44 PM, Carsten Kutzner <ckutzne at gwdg.de>
>>> wrote:
>>>
>>>  On 12/19/2013 12:53 PM, Nidhi Jatana wrote:
>>>>
>>>>  Dear Sir/Madam
>>>>> I generated the atomic density plot using g_densmap by giving the
>>>>> following
>>>>> command:
>>>>> g_densmap -f *.xtc -s *.pdb -n *.ndx -o *.xpm
>>>>>
>>>>> The calculation completed successfully but when I am trying to convert
>>>>> .xpm
>>>>> file to .eps file using xpm2ps command, its giving error and aborts.
>>>>>
>>>>>  What is the error message?
>>>>
>>>> If I use your set of commands with Gromacs 4.6.4, I can successfully
>>>>
>>> create
>>>
>>>> an EPS file.
>>>>
>>>> Carsten
>>>>
>>>>
>>>>  xpm2ps -f *.xpm -o *.eps -rainbow red -xpm *.xpm
>>>>>
>>>>> I have tried many options with setting -bx and -by but of no help. I
>>>>>
>>>> also
>>>
>>>> tried taking the .m2p file but the problem persist. Please find attached
>>>>> the .m2p file for reference. Please help me with this.
>>>>>
>>>>> Thanking you
>>>>>
>>>>> Regards
>>>>>    --
>>>>> Nidhi Jatana
>>>>> Senior Research Fellow
>>>>> Bioinformatics Center
>>>>> Sri Venkateswara College
>>>>> (University of Delhi)
>>>>> Dhaula Kuan
>>>>> New Delhi-110021.
>>>>>
>>>>>
>>>>>
>>>>>  --
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-- 
Nidhi Jatana
Senior Research Fellow
Bioinformatics Center
Sri Venkateswara College
(University of Delhi)
Dhaula Kuan
New Delhi-110021.