[gmx-users] Help with modified gmx_covar

Mark Abraham mark.j.abraham at gmail.com
Wed Jun 5 15:38:14 CEST 2013

You need to call the newly compiled code. Either install the new version
and source GMXRC appropriately, or use a full path to the new version in
the build tree.


On Wed, Jun 5, 2013 at 11:05 AM, rohitarora <rohitarora10 at gmail.com> wrote:

> Dear Gmx users,
> I need to ask you about a doubt I have regarding changing an analysis tool
> in Gromacs. More specifically g_covar. I found the modified source code for
> gmx_covar.c [ gmx_covar.c
> <http://gromacs.5086.x6.nabble.com/file/n5008825/gmx_covar.c>  ] and I
> would
> like to replace the current g_covar with modified one. I copied the source
> code in the src/tools directory and built g_covar
> cp gmx_covar.c ../softwares/gromacs4.5.6/src/tools
> make
> (or make g_covar)
> It runs fine, but when I run g_covar again, it gives me the old options.
> The
> new one should have more flags in addition to the old ones, like:
> -clog
> -xpmc (you can find them in source code)
> Does anyone know if I am missing something? If someone could briefly tell
> me
> the steps, I would really appreciate it.
> Best
> Rohit
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