[gmx-users] Seeing Martini membrane trajectory files

[Justin Lemkul]

On 6/10/13 10:07 AM, Neha wrote:
> Hi everybody!
>
> I have a quick question about VMD and trajectory files. It seems that VMD
> should be able to be use to view Gromacs trajectory files. I am working with
> lipid membranes, and I was able to view the final .gro file with VMD.
> However I was not able to see the entire trajectory, and I am not sure why.
> Does anybody have any idea why that would not work and how to fix it? I
> really want to view the trajectory file as I have some wayward water
> molecules. Let me know!
>

You need to load a configuration first, then load a trajectory as data for it. 
Refer to VMD tutorials and their mailing list for general VMD usage.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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