[gmx-users] Seeing Martini membrane trajectory files

Justin Lemkul jalemkul at vt.edu
Mon Jun 10 16:10:56 CEST 2013

On 6/10/13 10:07 AM, Neha wrote:
> Hi everybody!
> I have a quick question about VMD and trajectory files. It seems that VMD
> should be able to be use to view Gromacs trajectory files. I am working with
> lipid membranes, and I was able to view the final .gro file with VMD.
> However I was not able to see the entire trajectory, and I am not sure why.
> Does anybody have any idea why that would not work and how to fix it? I
> really want to view the trajectory file as I have some wayward water
> molecules. Let me know!

You need to load a configuration first, then load a trajectory as data for it. 
Refer to VMD tutorials and their mailing list for general VMD usage.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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