[gmx-users] Re: Genbox center of box

[Matt Bawn]

OK I found the problem. I had installed Surfnet the protein cavity finder a
few weeks ago, and it turns out this also has a function called genbox! so
my silly mistake.

I was wondering why centre and not center.


Thanks,

Matt




On Mon, Jun 10, 2013 at 6:23 PM, Justin Lemkul [via GROMACS] <
ml-node+s5086n5009004h90 at n6.nabble.com> wrote:

>
>
> On 6/10/13 3:26 PM, Matt Bawn wrote:
>
> >> I have never seen such a prompt, and I cannot reproduce the problem
> with
> > version
> >> 4.5.5 on my machine.  Did you install from source, or from some
> external
> > binary
> >> or package manager?  Are you running Gromacs directly, or are you using
> any
> > GUI
> >> interface of any sort?  Does the problem persist with a non-outdated
> > version
> >> like 4.6.2?
> >
> > I am running GROMACS that I installed and compiled myself via cygwin on
> a
> > windows machine. This prompt has only appeared recently and previously
> > following the tutorial instructions did not yield it. I went back to a
> > previous structure that had worked and the same prompt now also appears.
> I
> > can't think of anything that may have changed in the cygwin/gromacs
> > environment to cause this.
> >
>
> Got me stumped, and I don't have a Cygwin machine to test with, so I can't
> really help much more.  That prompt doesn't appear anywhere in the Gromacs
> source code, though, so it's really puzzling.  Testing with 4.6.2 would be
> useful.
>
> -Justin
>
> --
> ========================================
>
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
> --
> gmx-users mailing list    [hidden email]<http://user/SendEmail.jtp?type=node&node=5009004&i=0>
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to [hidden email]<http://user/SendEmail.jtp?type=node&node=5009004&i=1>.
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
>
> ------------------------------
>  If you reply to this email, your message will be added to the discussion
> below:
>
> http://gromacs.5086.x6.nabble.com/Genbox-center-of-box-tp5008990p5009004.html
>  To unsubscribe from Genbox center of box, click here<http://gromacs.5086.x6.nabble.com/template/NamlServlet.jtp?macro=unsubscribe_by_code&node=5008990&code=bWF0dGJhd25AZ21haWwuY29tfDUwMDg5OTB8MTMwMTc0MDg2NQ==>
> .
> NAML<http://gromacs.5086.x6.nabble.com/template/NamlServlet.jtp?macro=macro_viewer&id=instant_html%21nabble%3Aemail.naml&base=nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.view.web.template.NodeNamespace&breadcrumbs=notify_subscribers%21nabble%3Aemail.naml-instant_emails%21nabble%3Aemail.naml-send_instant_email%21nabble%3Aemail.naml>
>



-- 
Dr Matt Bawn
Research Associate
Brooklyn** College CUNY




--
View this message in context: http://gromacs.5086.x6.nabble.com/Genbox-center-of-box-tp5008990p5009075.html
Sent from the GROMACS Users Forum mailing list archive at Nabble.com.