[gmx-users] Re: Genbox center of box

Justin Lemkul jalemkul at vt.edu
Tue Jun 11 00:22:08 CEST 2013

On 6/10/13 3:26 PM, Matt Bawn wrote:
>> I have never seen such a prompt, and I cannot reproduce the problem with
> version
>> 4.5.5 on my machine.  Did you install from source, or from some external
> binary
>> or package manager?  Are you running Gromacs directly, or are you using any
>> interface of any sort?  Does the problem persist with a non-outdated
> version
>> like 4.6.2?
> I am running GROMACS that I installed and compiled myself via cygwin on a
> windows machine. This prompt has only appeared recently and previously
> following the tutorial instructions did not yield it. I went back to a
> previous structure that had worked and the same prompt now also appears. I
> can't think of anything that may have changed in the cygwin/gromacs
> environment to cause this.

Got me stumped, and I don't have a Cygwin machine to test with, so I can't 
really help much more.  That prompt doesn't appear anywhere in the Gromacs 
source code, though, so it's really puzzling.  Testing with 4.6.2 would be useful.



Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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