[gmx-users] dssp works fine, but do_dssp gives fatal error

[Nikunj Maheshwari]

The location of dssp is /usr/local/bin/dssp


On Wed, Jun 12, 2013 at 3:43 PM, Mark Abraham <mark.j.abraham at gmail.com>wrote:

> Right. And what is its location?
> On Jun 12, 2013 11:17 AM, "Nikunj Maheshwari" <nixcrazyforher at gmail.com>
> wrote:
>
> > Yes I did searched. But for most people, there were issues regarding the
> > path or wrong DSSP.
> > DSSP runs for me, but do_dssp does not.
> >
> >
> > On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund <erikm at xray.bmc.uu.se>
> > wrote:
> >
> > > Hi,
> > >
> > > Search the mailing list. This problem and its solution has been
> > repeatedly
> > > discussed.
> > >
> > > Erik
> > >
> > > On 12 Jun 2013, at 10:31, Nikunj Maheshwari <nixcrazyforher at gmail.com>
> > > wrote:
> > >
> > > > Dear all,
> > > >
> > > > I installed dssp (Version 2.0.4) and it works perfect on a .pdb file.
> > > > I am trying to use it for do_dssp command but get the following error
> > > each
> > > > time:
> > > >
> > > > "Fatal error:
> > > > Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68
> >
> > > > /dev/null 2> /dev/null
> > > > "
> > > >
> > > > Is there any way to rectify it?
> > > >
> > > > Thanks.
> > > > Nikunj
> > > > --
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