[gmx-users] dssp works fine, but do_dssp gives fatal error

[Erik Marklund]

Search again. The syntax for invoking dssp changed at some point and it took a while before do_dssp adapted to that. If your do_dssp is lacking the -ver option then I'm quite confident that it uses the old syntax, which doesn't work with the newer versions (v. 2.0+ I think) of dssp.

Erik
 
On 12 Jun 2013, at 11:17, Nikunj Maheshwari <nixcrazyforher at gmail.com> wrote:

> Yes I did searched. But for most people, there were issues regarding the
> path or wrong DSSP.
> DSSP runs for me, but do_dssp does not.
> 
> 
> On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund <erikm at xray.bmc.uu.se> wrote:
> 
>> Hi,
>> 
>> Search the mailing list. This problem and its solution has been repeatedly
>> discussed.
>> 
>> Erik
>> 
>> On 12 Jun 2013, at 10:31, Nikunj Maheshwari <nixcrazyforher at gmail.com>
>> wrote:
>> 
>>> Dear all,
>>> 
>>> I installed dssp (Version 2.0.4) and it works perfect on a .pdb file.
>>> I am trying to use it for do_dssp command but get the following error
>> each
>>> time:
>>> 
>>> "Fatal error:
>>> Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 >
>>> /dev/null 2> /dev/null
>>> "
>>> 
>>> Is there any way to rectify it?
>>> 
>>> Thanks.
>>> Nikunj
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