[gmx-users] remd analysis

Shine A shine.a at iisertvm.ac.in
Tue Jun 25 13:18:08 CEST 2013


       I did an remd simulation in implicit solvent for a peptide.I want to
compare the NOE distances from NMR and various conformations from REMD
output. Here how I get various conformations from remd trajectory? .Is any
script is available to find distance between two particular atoms?.How I
get kinetics of folding from g_kinetics?

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