[gmx-users] remd analysis

[Mark Abraham]

There's number of analysis tools briefly described in chapter 8 of the
manual, and lots more detail in Appendix D. Have a look at what is
there, and do your background reading of the literature to see the
kinds of things people have done before you.

Mark

On Tue, Jun 25, 2013 at 1:18 PM, Shine A <shine.a at iisertvm.ac.in> wrote:
> Sir,
>
>        I did an remd simulation in implicit solvent for a peptide.I want to
> compare the NOE distances from NMR and various conformations from REMD
> output. Here how I get various conformations from remd trajectory? .Is any
> script is available to find distance between two particular atoms?.How I
> get kinetics of folding from g_kinetics?
> --
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