[gmx-users] Re: RNA simulation (Justin Lemkul)

[Justin Lemkul]

On 11/2/13 6:32 AM, Hossein Lanjanian wrote:
> Thank Justin for your help
> What forcefield is most suitable to study this case?

The one that your careful study of the literature tells you is the most 
reliable.  It's up to you to justify your choice, not what someone on the 
Internet tells you :)

-Justin

>   On Oct 31, 2013 1:56 PM, "Hossein Lanjanian" <hossein.lanjanian at gmail.com>
> wrote:
>
>> Hi
>>
>> I'm going to study the molecular dynamics of an RNA(which has stem-loop
>> structure) by comparison the native RNA structure and it's mutant to find
>> the conformation changes of 3D structure. This RNA comprises 70
>> nucleotides. Do you think that it would be possible in Gromacs.
>>

-- 
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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

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