November 2013 Archives by author

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Starting: Fri Nov 1 00:03:29 CET 2013
Ending: Sat Nov 30 21:59:23 CET 2013
Messages: 761

[gmx-users] (no subject) Shine A
[gmx-users] remd Shine A
[gmx-users] Fwd: remd Shine A
[gmx-users] to study native cluster Shine A
[gmx-users] cluster-PCA Shine A
[gmx-users] probability distribution of bond distance/length Mark Abraham
[gmx-users] GMX manually generate topology for residues Mark Abraham
[gmx-users] Help to simulate gas mixture Mark Abraham
[gmx-users] Re: Installation Gromacs 4.5.7 on rocluster cluster with centos 6.0 Mark Abraham
[gmx-users] Gromacs-4.6 on two Titans GPUs Mark Abraham
[gmx-users] Re: Using gromacs on Rocks cluster Mark Abraham
[gmx-users] Re: Hardware for best gromacs performance? Mark Abraham
[gmx-users] Number of water molecules around any methyl carbon Mark Abraham
[gmx-users] Analysis tools and triclinic boxes Mark Abraham
[gmx-users] stopped simulation Mark Abraham
[gmx-users] Re: Gromacs-4.6 on two Titans GPUs Mark Abraham
[gmx-users] nose-hoover vs v-rescale in implicit solvent Mark Abraham
[gmx-users] Re: single point calculation with gromacs Mark Abraham
[gmx-users] Re: CHARMM .mdp settings for GPU Mark Abraham
[gmx-users] Problem compiling Gromacs 4.6.3 with CUDA Mark Abraham
[gmx-users] installing gromacs 4.6.1 with openmpi Mark Abraham
[gmx-users] Re: CHARMM .mdp settings for GPU Mark Abraham
[gmx-users] Re: LIE method with PME Mark Abraham
[gmx-users] Problem compiling Gromacs 4.6.3 with CUDA Mark Abraham
[gmx-users] Re: LIE method with PME Mark Abraham
[gmx-users] mpi segmentation error in continuation of REMD simulation with gromacs 4.5.5 Mark Abraham
[gmx-users] Problem compiling Gromacs 4.6.3 with CUDA Mark Abraham
[gmx-users] mpi segmentation error in continuation of REMD simulation with gromacs 4.5.5 Mark Abraham
[gmx-users] Reproducing results with independent runs Mark Abraham
[gmx-users] About Compiler Compatibility for Gromacs 4.6.2 Compilation Mark Abraham
mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs) Mark Abraham
[gmx-users] problem in running mdrun command Mark Abraham
[gmx-users] help about ibi Mark Abraham
[gmx-users] Recompile Gromacs 4.6.3 Mark Abraham
[gmx-users] error while running pdb2gmx Mark Abraham
[gmx-users] GROMACS 4.6.4 is released Mark Abraham
[gmx-users] remd Mark Abraham
[gmx-users] GROMACS 4.6.4 is released Mark Abraham
[gmx-users] h-bond in g_hbond Mark Abraham
[gmx-users] restart failed Mark Abraham
[gmx-users] installing latest version of gromacs 4.6.3 Mark Abraham
[gmx-users] Replicating triclinic unit cells Mark Abraham
[gmx-users] Cannot write trajectory frame; maybe you are out of disk space? Mark Abraham
[gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs Mark Abraham
[gmx-users] Windows/x64, VCVS2012 compiled, crash on checkpoint writing Mark Abraham
[gmx-users] Windows/x64, VCVS2012 compiled, crash on checkpoint writing Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] nstlist and performances Mark Abraham
[gmx-users] nstlist and performances Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69 Mark Abraham
[gmx-users] Compiling GROMACS with fftw3 Mark Abraham
[gmx-users] Compiling GROMACS with fftw3 Mark Abraham
[gmx-users] nstlist and performances Mark Abraham
[gmx-users] installing latest version of gromacs 4.6.3 Mark Abraham
[gmx-users] nstlist and performances Mark Abraham
[gmx-users] cut-off for different groups GROMACS 4.6.3 Mark Abraham
[gmx-users] cut-off for different groups GROMACS 4.6.3 Mark Abraham
[gmx-users] Avoiding domain decomposition error Mark Abraham
[gmx-users] pressure coupling Mark Abraham
[gmx-users] Expanding of the boundaries of the enssemble Mark Abraham
[gmx-users] gromacs 4.6.4 version - nvt equilibration error Mark Abraham
[gmx-users] gromacs 4.6.4 version - nvt equilibration error Mark Abraham
[gmx-users] Expanding of the boundaries of the enssemble Mark Abraham
[gmx-users] # of threads different than # of cores -> gmx hangs. Mark Abraham
[gmx-users] Extending Simulation Mark Abraham
[gmx-users] Expanding of the boundaries of the enssemble Mark Abraham
[gmx-users] Coulombic potential modifiers in Gromacs 4.6.4. Mark Abraham
[gmx-users] How can I tell whether or not Gromacs was compiled with MPI? Mark Abraham
[gmx-users] Invalid order for directive bondtypes Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] the changing of velocity in production stage Mark Abraham
[gmx-users] energy group tables Mark Abraham
[gmx-users] Coulomb Long range using PME Mark Abraham
[gmx-users] Coulombic potential modifiers in Gromacs 4.6.4. Mark Abraham
[gmx-users] planned power outage Mark Abraham
[gmx-users] planned power outage Mark Abraham
[gmx-users] The 20 subsystems are not compatible (REMD) Mark Abraham
[gmx-users] the changing of velocity in production stage Mark Abraham
[gmx-users] # of threads different than # of cores -> gmx hangs. Mark Abraham
[gmx-users] calculate velocity autocorrelation function Mark Abraham
[gmx-users] step 0Segmentation fault: 11 Mark Abraham
[gmx-users] planned power outage Mark Abraham
[gmx-users] Replica exchange problem on IBM BlueGene/Q Mark Abraham
[gmx-users] topology for small peptide using amber03 Mark Abraham
[gmx-users] step 0Segmentation fault: 11 Mark Abraham
[gmx-users] REMD on GPU Mark Abraham
[gmx-users] valid command line argument do i use by mdrun_mpi_d for 8 cores. Mark Abraham
[gmx-users] Charge correction PME Mark Abraham
[gmx-users] How to construct mixed lipid bilayer Nikhil Agrawal
[gmx-users] after using ACPYPE , GROMACS OPLS itp file generated an atom type like opls_x with mass 0.000 Alan
[gmx-users] ACPYPE FAILED: 'MolTopol' object has no attribute 'chiralGroups' Alan
[gmx-users] Re: Replacing atom J Alizadeh
[gmx-users] Problem compiling Gromacs 4.6.3 with CUDA Jones de Andrade
[gmx-users] Problem compiling Gromacs 4.6.3 with CUDA Jones de Andrade
[gmx-users] Problem compiling Gromacs 4.6.3 with CUDA Jones de Andrade
[gmx-users] DSSP output Anirban
[gmx-users] mailing list migration Rossen Apostolov
[gmx-users] test 2, please ignore Rossen Apostolov
[gmx-users] test gmx-users, please ignore Rossen Apostolov
[gmx-users] (no subject) Shima Arasteh
[gmx-users] position restraint term Shima Arasteh
[gmx-users] position restraint term Shima Arasteh
[gmx-users] Gromacs-4.6 on two Titans GPUs Richard Broadbent
[gmx-users] Re: Gromacs-4.6 on two Titans GPUs Richard Broadbent
[gmx-users] a way to constraint molecules(make rigid CS2) Richard Broadbent
[gmx-users] gromacs 4.6.4 version - nvt equilibration error Elton Carvalho
[gmx-users] Calculating diffusion coefficient in three dimension Dr. Vitaly Chaban
[gmx-users] Re: Reaction field zero and ions Dr. Vitaly Chaban
[gmx-users] Freezing problem Dr. Vitaly Chaban
[gmx-users] umbrella versus constraint in the pulling code Dr. Vitaly Chaban
[gmx-users] Charge correction PME Dr. Vitaly Chaban
[gmx-users] Hardware for best gromacs performance? David Chalmers
[gmx-users] can not write coordinate file when running ibi Chandan Choudhury
[gmx-users] Compiling GROMACS with fftw3 Chandan Choudhury
[gmx-users] Extending Simulation Chandan Choudhury
[gmx-users] energy group tables Chandan Choudhury
[gmx-users] energy group tables Chandan Choudhury
[gmx-users] mdrun_mpi_d Chandan Choudhury
[gmx-users] GMX_THREAD_MPI=ON" does not exis Chandan Choudhury
[gmx-users] extra gro file generation Riccardo Concu
[gmx-users] Question about make_ndx and g_angle Riccardo Concu
[gmx-users] nstlist and performances Riccardo Concu
[gmx-users] Expanding of the boundaries of the enssemble Bogdan Costescu
[gmx-users] Looking for advice on Monte Carlo simulations, please Andrew DeYoung
[gmx-users] How can I tell whether or not Gromacs was compiled with MPI? Andrew DeYoung
[gmx-users] About g_potential Andrew DeYoung
[gmx-users] Mailing list archive Andrew DeYoung
[gmx-users] Mailing list archive Andrew DeYoung
[gmx-users] Mailing list archive Andrew DeYoung
[gmx-users] Re: LIE method with PME Williams Ernesto Miranda Delgado
[gmx-users] Re: LIE method with PME Williams Ernesto Miranda Delgado
[gmx-users] Simulation box size, LIE and PME Williams Ernesto Miranda Delgado
[gmx-users] Re: Ligand simulation for LIE with PME Williams Ernesto Miranda Delgado
[gmx-users] Reaction field zero, ions, twin-range and LIE Williams Ernesto Miranda Delgado
[gmx-users] Re: Thankful Williams Ernesto Miranda Delgado
[gmx-users] Re: Reaction field zero and ions Williams Ernesto Miranda Delgado
[gmx-users] Re: ok, thank you Williams Ernesto Miranda Delgado
[gmx-users] RF0 and g_energy Williams Ernesto Miranda Delgado
[gmx-users] RF0 and g_energy Williams Ernesto Miranda Delgado
[gmx-users] RF0 and g_energy Williams Ernesto Miranda Delgado
[gmx-users] Re: CHARMM .mdp settings for GPU Rajat Desikan
[gmx-users] Re: CHARMM .mdp settings for GPU Rajat Desikan
[gmx-users] Re: CHARMM .mdp settings for GPU Rajat Desikan
[gmx-users] segmentation fault on gromacs 4.5.5 after mdrun Carlos Javier Almeciga Diaz
[gmx-users] Charge correction PME Benrezkallah Djamila
[gmx-users] Re: Gromacs-4.6 on two Titans GPUs Dwey
[gmx-users] (no subject) Mahboobeh Eslami
[gmx-users] (no subject) Mahboobeh Eslami
[gmx-users] the changing of velocity in production stage Mahboobeh Eslami
[gmx-users] the changing of velocity in production stage Mahboobeh Eslami
[gmx-users] gen_vel Mahboobeh Eslami
[gmx-users] calculate velocity autocorrelation function Mahboobeh Eslami
[gmx-users] calculate velocity autocorrelation function Mahboobeh Eslami
[gmx-users] calculate velocity autocorrelation function Mahboobeh Eslami
[gmx-users] ACPYPE FAILED: 'MolTopol' object has no attribute 'chiralGroups' Mahboobeh Eslami
[gmx-users] ACPYPE FAILED: 'MolTopol' object has no attribute 'chiralGroups' Mahboobeh Eslami
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Mahboobeh Eslami
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Mahboobeh Eslami
[gmx-users] mdrun_mpi_d Mahboobeh Eslami
[gmx-users] mdrun_mpi_d Mahboobeh Eslami
[gmx-users] GMX_THREAD_MPI=ON" does not exis Mahboobeh Eslami
[gmx-users] GMX_THREAD_MPI=ON" does not exis Mahboobeh Eslami
[gmx-users] valid command line argument do i use by mdrun_mpi_d for 8 cores. Mahboobeh Eslami
[gmx-users] MD simulations in the presence of osmolytes Amjad Farooq
[gmx-users] Replicating triclinic unit cells Eudes Fileti
[gmx-users] Lysozyme in Water at different pH and Ionic strength Luís Carlos Filipe
[gmx-users] New empirical force field tools: Release of R.E.D. Server Dev./R.E.D. Python FyD
[gmx-users] free energy of hydration using GB Neha Gandhi
[gmx-users] Invalid order for directive bondtypes Elham Gholamrezai
[gmx-users] Invalid order for directive bondtypes Elham Gholamrezai
[gmx-users] Re: Hardware for best gromacs performance? Timo Graen
[gmx-users] Re: Hardware for best gromacs performance? Timo Graen
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Timo Graen
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Timo Graen
[gmx-users] I can't re-image molecule for multiple MD without trjcat them from start Asaminew Haile
[gmx-users] GMX_THREAD_MPI=ON" does not exis Hardy, Adam
[gmx-users] valid command line argument do i use by mdrun_mpi_d for 8 cores. Hardy, Adam
[gmx-users] TFE-water simulation João Henriques
[gmx-users] TFE-water simulation João Henriques
[gmx-users] TFE-water simulation João Henriques
[gmx-users] can't find my protein pbd file in Protein data bank file João Henriques
[gmx-users] probability distribution of bond distance/length Xu Dong Huang
[gmx-users] No Distribution? Xu Dong Huang
[gmx-users] No Distribution? Xu Dong Huang
[gmx-users] No Distribution? Xu Dong Huang
[gmx-users] No Distribution? Xu Dong Huang
[gmx-users] DPOSRES and energy minimization Gianluca Interlandi
[gmx-users] DPOSRES and energy minimization Gianluca Interlandi
[gmx-users] Gentle heating with implicit solvent Gianluca Interlandi
[gmx-users] Gentle heating with implicit solvent Gianluca Interlandi
[gmx-users] Gentle heating with implicit solvent Gianluca Interlandi
[gmx-users] nose-hoover vs v-rescale in implicit solvent Gianluca Interlandi
[gmx-users] Re: CHARMM .mdp settings for GPU Gianluca Interlandi
[gmx-users] Re: CHARMM .mdp settings for GPU Gianluca Interlandi
[gmx-users] Replica exchange problem on IBM BlueGene/Q Ippoliti, Emiliano
[gmx-users] Energy minimization has stopped.... Kalyanashis Jana
[gmx-users] Energy minimization has stopped.... Kalyanashis Jana
[gmx-users] Question about make_ndx and g_angle Chang Woon Jang
[gmx-users] Question about make_ndx and g_angle Chang Woon Jang
[gmx-users] About g_potential Guangwei Jiang
[gmx-users] About g_potential Guangwei Jiang
[gmx-users] a way to constraint molecules(make rigid CS2) JuYeon
[gmx-users] installation error under openSuse 12.2 Christoph Junghans
[gmx-users] (no subject) Raj K
[gmx-users] Re: Energy minimization has stopped.... Kalyanashis
[gmx-users] Re: Hardware for best gromacs performance? Dwey Kauffman
[gmx-users] Re: Gromacs-4.6 on two Titans GPUs Dwey Kauffman
[gmx-users] Re: Hardware for best gromacs performance? Dwey Kauffman
mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs) Dwey Kauffman
mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs) Dwey Kauffman
[gmx-users] Questions about r_rdf in gromacs.4.6 Chuipeng Kong
[gmx-users] trjconv error Rama Krishna Koppisetti
[gmx-users] trjconv error Rama Krishna Koppisetti
[gmx-users] Normal Mode Analysis Sathish Kumar
[gmx-users] Normal Mode Analysis Sathish Kumar
[gmx-users] Normal Mode Analysis Sathish Kumar
[gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs Carsten Kutzner
[gmx-users] Avoiding domain decomposition error Carsten Kutzner
[gmx-users] Re: RNA simulation (Justin Lemkul) Hossein Lanjanian
[gmx-users] problem vwith ethanol-water solution Justin Lemkul
[gmx-users] ligand-protein simulation Justin Lemkul
[gmx-users] Lysozyme in Water at different pH and Ionic strength Justin Lemkul
[gmx-users] g_lie and ligand only simulation Justin Lemkul
[gmx-users] g_lie and ligand only simulation Justin Lemkul
[gmx-users] Re: RNA simulation (Justin Lemkul) Justin Lemkul
[gmx-users] Re: trjconv for pbc Justin Lemkul
[gmx-users] g_lie and ligand only simulation Justin Lemkul
[gmx-users] Re: trjconv for pbc Justin Lemkul
[gmx-users] energy minimization problem Justin Lemkul
[gmx-users] No Distribution? Justin Lemkul
[gmx-users] No Distribution? Justin Lemkul
[gmx-users] No Distribution? Justin Lemkul
[gmx-users] energy minimization problem Justin Lemkul
[gmx-users] DPOSRES and energy minimization Justin Lemkul
[gmx-users] Re: trjconv for pbc Justin Lemkul
[gmx-users] DPOSRES and energy minimization Justin Lemkul
[gmx-users] g_lie useage Justin Lemkul
[gmx-users] Different Residues... Justin Lemkul
[gmx-users] Fw: energy minimization problem Justin Lemkul
[gmx-users] gmxcheck Justin Lemkul
[gmx-users] gmxcheck Justin Lemkul
[gmx-users] gmxcheck Justin Lemkul
[gmx-users] Fw: energy minimization problem Justin Lemkul
[gmx-users] Group protein not found in indexfile Justin Lemkul
[gmx-users] Analysis tools and triclinic boxes Justin Lemkul
[gmx-users] Group protein not found in indexfile Justin Lemkul
[gmx-users] Gentle heating with implicit solvent Justin Lemkul
[gmx-users] .top file for a mixed solvent Justin Lemkul
[gmx-users] Energy minimization has stopped.... Justin Lemkul
[gmx-users] free energy Justin Lemkul
[gmx-users] Re: Energy minimization has stopped.... Justin Lemkul
[gmx-users] Energy minimization has stopped.... Justin Lemkul
[gmx-users] mdrun Justin Lemkul
[gmx-users] Re: Replacing atom Justin Lemkul
[gmx-users] Re: Analysis tools and triclinic boxes Justin Lemkul
[gmx-users] g_lie and ligand only simulation Justin Lemkul
[gmx-users] Number of water molecules around any methyl carbon Justin Lemkul
[gmx-users] stopped simulation Justin Lemkul
[gmx-users] Group protein not found in indexfile Justin Lemkul
[gmx-users] stopped simulation Justin Lemkul
[gmx-users] stopped simulation Justin Lemkul
[gmx-users] stopped simulation Justin Lemkul
[gmx-users] Error in Umbrella sampling command Justin Lemkul
[gmx-users] DSSP output Justin Lemkul
[gmx-users] Re: choosing force field Justin Lemkul
[gmx-users] Re: CHARMM .mdp settings for GPU Justin Lemkul
[gmx-users] Reg error in Compilation Of Gromacs 4.6.2 Justin Lemkul
[gmx-users] Re: choosing force field Justin Lemkul
[gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets Justin Lemkul
[gmx-users] Umbrella Sampling tutorial Justin Lemkul
[gmx-users] Simulation box size, LIE and PME Justin Lemkul
[gmx-users] Re: Ligand simulation for LIE with PME Justin Lemkul
[gmx-users] Umbrella Sampling tutorial Justin Lemkul
[gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets Justin Lemkul
[gmx-users] Re: CHARMM .mdp settings for GPU Justin Lemkul
[gmx-users] Re: CHARMM .mdp settings for GPU Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] Umbrella Sampling tutorial Justin Lemkul
[gmx-users] Umbrella Sampling tutorial Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] help about logfile Justin Lemkul
[gmx-users] installation error under openSuse 12.2 Justin Lemkul
[gmx-users] segmentation fault on gromacs 4.5.5 after mdrun Justin Lemkul
[gmx-users] Re: Reaction field zero and ions Justin Lemkul
[gmx-users] hydrogen bond calculation problem Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] Restarting a simulation after replacing an empty md.trr file Justin Lemkul
[gmx-users] Re: g_analyze Justin Lemkul
[gmx-users] Calculating diffusion coefficient in three dimension Justin Lemkul
[gmx-users] Invalid order for directive defaults Justin Lemkul
[gmx-users] Re: segmentation fault on gromacs 4.5.5 after mdrun Justin Lemkul
[gmx-users] Re: Restarting a simulation after replacing an empty md.trr file Justin Lemkul
[gmx-users] Calculating diffusion coefficient in three dimension Justin Lemkul
[gmx-users] Re: Restarting a simulation after replacing an empty md.trr file Justin Lemkul
[gmx-users] Re: segmentation fault on gromacs 4.5.5 after mdrun Justin Lemkul
[gmx-users] Calculating diffusion coefficient in three dimension Justin Lemkul
[gmx-users] Change in the positon of structural Zinc and calcium ions during MD Justin Lemkul
[gmx-users] Calculating diffusion coefficient in three dimension Justin Lemkul
[gmx-users] Re: Change in the position of structural Zinc and calcium ions during MD Justin Lemkul
[gmx-users] Calculating diffusion coefficient in three dimension Justin Lemkul
[gmx-users] Invalid order for directive defaults Justin Lemkul
[gmx-users] error while running pdb2gmx Justin Lemkul
[gmx-users] Calculating diffusion coefficient in three dimension Justin Lemkul
[gmx-users] Invalid order for directive defaults Justin Lemkul
[gmx-users] Invalid order for directive defaults Justin Lemkul
[gmx-users] remd Justin Lemkul
[gmx-users] RF0 and g_energy Justin Lemkul
[gmx-users] simulated annealing Justin Lemkul
[gmx-users] Average number of salt bridge Justin Lemkul
[gmx-users] g_select Justin Lemkul
[gmx-users] membrane protein tutorial Justin Lemkul
[gmx-users] how to pull both side Justin Lemkul
[gmx-users] help about logfile Justin Lemkul
[gmx-users] energy minimization erorr Justin Lemkul
[gmx-users] setting up simulation with mixed chain (nucleotide + amino acid) Justin Lemkul
[gmx-users] RF0 and g_energy Justin Lemkul
[gmx-users] installing latest version of gromacs 4.6.3 Justin Lemkul
[gmx-users] about using do_dssp for a few residues Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69 Justin Lemkul
[gmx-users] Compiling GROMACS with fftw3 Justin Lemkul
[gmx-users] ZN ion not in force field database Justin Lemkul
[gmx-users] gromacs 4.6.4 version - nvt equilibration error Justin Lemkul
[gmx-users] error in running pdb2gmx Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] I can't re-image molecule for multiple MD without trjcat them from start Justin Lemkul
[gmx-users] Compiling GROMACS with fftw3 Justin Lemkul
[gmx-users] cut-off for different groups GROMACS 4.6.3 Justin Lemkul
[gmx-users] QM guy at wits' end Justin Lemkul
[gmx-users] topology file for n-propanol Justin Lemkul
[gmx-users] topology file for n-propanol Justin Lemkul
[gmx-users] How to create topology and coordinate files for different oils Justin Lemkul
[gmx-users] Expanding of the boundaries of the enssemble Justin Lemkul
[gmx-users] sufficient time for simulation Justin Lemkul
[gmx-users] sufficient time for simulation Justin Lemkul
[gmx-users] Grompp error while using dual topology for free energy Justin Lemkul
[gmx-users] trjconv error Justin Lemkul
[gmx-users] trjconv error Justin Lemkul
[gmx-users] P-LINCS Justin Lemkul
[gmx-users] Martini and Gromacs 3 and 4 Justin Lemkul
[gmx-users] gromacs-4.6.4 with GPU Justin Lemkul
[gmx-users] GPU g_energy problem Justin Lemkul
[gmx-users] Can't do GB electrostatics; the implicit_genborn_params section of the forcefield is missing parameters for 9 atomtypes or they might be negative. Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Regarding soft-core potential Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 117 Justin Lemkul
[gmx-users] Regarding soft-core potential Justin Lemkul
[gmx-users] Mailing list archive Justin Lemkul
[gmx-users] step 0Segmentation fault: 11 Justin Lemkul
[gmx-users] gen_vel Justin Lemkul
[gmx-users] calculate velocity autocorrelation function Justin Lemkul
[gmx-users] step 0Segmentation fault: 11 Justin Lemkul
[gmx-users] free energy landscape Justin Lemkul
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Justin Lemkul
[gmx-users] For GMX implicit solvent MD Justin Lemkul
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Justin Lemkul
[gmx-users] pdb2gmx fails because of imaginary "Residue E" Justin Lemkul
[gmx-users] Umbrella Sampling tutorial Justin Lemkul
[gmx-users] double precision and minimisation error Justin Lemkul
[gmx-users] Recompile Gromacs 4.6.3 Jheng Wei Li
[gmx-users] Recompile Gromacs 4.6.3 Jheng Wei Li
[gmx-users] Recompile Gromacs 4.6.3 Jheng Wei Li
[gmx-users] cut-off for different groups GROMACS 4.6.3 Jheng Wei Li
[gmx-users] cut-off for different groups GROMACS 4.6.3 Jheng Wei Li
[gmx-users] cut-off for different groups GROMACS 4.6.3 Jheng Wei Li
[gmx-users] g_lie and ligand only simulation Kavyashree M
[gmx-users] g_lie and ligand only simulation Kavyashree M
[gmx-users] g_lie and ligand only simulation Kavyashree M
[gmx-users] g_lie and ligand only simulation Kavyashree M
[gmx-users] g_lie and ligand only simulation Kavyashree M
[gmx-users] g_lie and ligand only simulation Kavyashree M
[gmx-users] g_lie and ligand only simulation Kavyashree M
[gmx-users] Ligand simulation Kavyashree M
[gmx-users] Lysozyme in Water at different pH and Ionic strength Mass
[gmx-users] How to create topology and coordinate files for different oils Mass
[gmx-users] can't find my protein pbd file in Protein data bank file Mass
[gmx-users] gmxcheck Ankita Naithani
[gmx-users] gmxcheck Ankita Naithani
[gmx-users] gmxcheck Ankita Naithani
[gmx-users] gmxcheck Ankita Naithani
[gmx-users] Help on the vector component Ankita Naithani
[gmx-users] Fwd: Help on the vector component Ankita Naithani
[gmx-users] Fwd: Help on the vector component Ankita Naithani
[gmx-users] Fwd: Help on the vector component Ankita Naithani
[gmx-users] Gibbs Energy Calculation and charges Christopher Neale
[gmx-users] GPU g_energy problem Andrei Neamtu
[gmx-users] GPU g_energy problem Andrei Neamtu
[gmx-users] free energy Kieu Thu Nguyen
[gmx-users] Re: Hardware for best gromacs performance? Brad Van Oosten
[gmx-users] Gemcitabine topolgy for OPLS Andres Ortega
[gmx-users] Looking for advice on Monte Carlo simulations, please Andrew S. Paluch
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69 Hari Pandey
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69 Hari Pandey
[gmx-users] installing latest version of gromacs 4.6.3 Luís Pereira
[gmx-users] MD simulations in the presence of osmolytes XAvier Periole
[gmx-users] # of threads different than # of cores -> gmx hangs. XAvier Periole
[gmx-users] # of threads different than # of cores -> gmx hangs. XAvier Periole
[gmx-users] # of threads different than # of cores -> gmx hangs. XAvier Periole
[gmx-users] Martini and Gromacs 3 and 4 XAvier Periole
[gmx-users] # of threads different than # of cores -> gmx hangs. XAvier Periole
[gmx-users] # of threads different than # of cores -> gmx hangs. XAvier Periole
[gmx-users] Invalid order for directive defaults Atila Petrosian
[gmx-users] Invalid order for directive defaults Atila Petrosian
[gmx-users] Invalid order for directive defaults Atila Petrosian
[gmx-users] Invalid order for directive defaults Atila Petrosian
[gmx-users] Invalid order for directive defaults Atila Petrosian
[gmx-users] Calculating diffusion coefficient in three dimension Thomas Piggot
[gmx-users] AMBER ff10 with Gromacs Thomas Piggot
[gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs Prajapati, Jigneshkumar Dahyabhai
[gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs Prajapati, Jigneshkumar Dahyabhai
[gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs Prajapati, Jigneshkumar Dahyabhai
[gmx-users] ZN ion not in force field database Prashant
[gmx-users] ZN ion not in force field database Prashant
[gmx-users] Gromacs-4.6 on two Titans GPUs Szilárd Páll
[gmx-users] Re: Hardware for best gromacs performance? Szilárd Páll
[gmx-users] Hardware for best gromacs performance? Szilárd Páll
[gmx-users] Gromacs-4.6 on two Titans GPUs Szilárd Páll
[gmx-users] Re: Hardware for best gromacs performance? Szilárd Páll
[gmx-users] Re: Gromacs-4.6 on two Titans GPUs Szilárd Páll
[gmx-users] Re: Hardware for best gromacs performance? Szilárd Páll
mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs) Szilárd Páll
[gmx-users] Re: Gromacs-4.6 on two Titans GPUs Szilárd Páll
mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs) Szilárd Páll
[gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs Szilárd Páll
[gmx-users] # of threads different than # of cores -> gmx hangs. Szilárd Páll
[gmx-users] # of threads different than # of cores -> gmx hangs. Szilárd Páll
[gmx-users] gromacs-4.6.4 with GPU Szilárd Páll
[gmx-users] Warning while using g_bar Szilárd Páll
[gmx-users] AMBER ff10 with Gromacs Szilárd Páll
[gmx-users] parallelization of processors on single system/node using MPI Szilárd Páll
[gmx-users] AMBER ff10 with Gromacs Szilárd Páll
[gmx-users] mpi segmentation error in continuation of REMD simulation with gromacs 4.5.5 Qin Qiao
[gmx-users] mpi segmentation error in continuation of REMD simulation with gromacs 4.5.5 Qin Qiao
[gmx-users] Change in the positon of structural Zinc and calcium ions during MD Rama
[gmx-users] Re: Change in the position of structural Zinc and calcium ions during MD Rama
[gmx-users] trjconv error Rama
[gmx-users] (no subject) Mohsen Ramezanpour
[gmx-users] pressure coupling Mohsen Ramezanpour
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 86 Mohsen Ramezanpour
[gmx-users] calculate velocity autocorrelation function Mohsen Ramezanpour
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Mohsen Ramezanpour
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Mohsen Ramezanpour
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Mohsen Ramezanpour
[gmx-users] AMBER99sb-ILDN force field and TIP4P water model Mohsen Ramezanpour
[gmx-users] The 20 subsystems are not compatible (REMD) Pacho Ramos
[gmx-users] The 20 subsystems are not compatible (REMD) Pacho Ramos
[gmx-users] Calculating diffusion coefficient in three dimension Venkat Reddy
[gmx-users] Calculating diffusion coefficient in three dimension Venkat Reddy
[gmx-users] Calculating diffusion coefficient in three dimension Venkat Reddy
[gmx-users] Calculating diffusion coefficient in three dimension Venkat Reddy
[gmx-users] Calculating diffusion coefficient in three dimension Venkat Reddy
[gmx-users] Calculating diffusion coefficient in three dimension Venkat Reddy
[gmx-users] Calculating diffusion coefficient in three dimension Venkat Reddy
[gmx-users] MM-GB/SA analysis in Gromacs Augusto Rocha
[gmx-users] QM guy at wits' end SAllen
[gmx-users] QM guy at wits' end SAllen
[gmx-users] Enterobactin binding to Iron(III) Jonathan Saboury
[gmx-users] problem vwith ethanol-water solution Ehsan Sadeghi
[gmx-users] .top file for a mixed solvent Ehsan Sadeghi
[gmx-users] stopped simulation Ehsan Sadeghi
[gmx-users] stopped simulation Ehsan Sadeghi
[gmx-users] stopped simulation Ehsan Sadeghi
[gmx-users] topology file for n-propanol Ehsan Sadeghi
[gmx-users] topology file for n-propanol Ehsan Sadeghi
[gmx-users] sufficient time for simulation Ehsan Sadeghi
[gmx-users] sufficient time for simulation Ehsan Sadeghi
[gmx-users] Diffusion/PBC Debashis Sahu
[gmx-users] Diffusion/PBC Debashis Sahu
[gmx-users] Freezing problem Debashis Sahu
[gmx-users] Freezing problem Debashis Sahu
[gmx-users] energy group tables Humberto Saint-Martin
[gmx-users] Free energy of a surfactant with a counterion Humberto Saint-Martin
[gmx-users] Free energy of a surfactant with a counterion Humberto Saint-Martin
[gmx-users] energy group tables Humberto Saint-Martin
[gmx-users] h-bond in g_hbond Raghunath Satpathy
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 68 Raghunath Satpathy
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 84 Raghunath Satpathy
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 86 Raghunath Satpathy
[gmx-users] Wall potential for a membrane simulation Marianne Schulte
[gmx-users] Group protein not found in indexfile Steve Seibold
[gmx-users] Group protein not found in indexfile Steve Seibold
[gmx-users] Group protein not found in indexfile Steve Seibold
[gmx-users] Martini and Gromacs 3 and 4 Steve Seibold
[gmx-users] g_lie useage Saman Shahriyari
[gmx-users] retrieve box size from .trr or .tpr Saman Shahriyari
[gmx-users] problem in running mdrun command S.Chandra Shekar
[gmx-users] Error in Umbrella sampling command Arunima Shilpi
[gmx-users] Regarding soft core parameter: Relative solvation free energy calculation Michael Shirts
[gmx-users] Regarding soft core parameter: Relative solvation free energy calculation Michael Shirts
[gmx-users] Regarding soft core parameter: Relative solvation free energy calculation Michael Shirts
[gmx-users] Implicit solvent simulation of protein folding Tobias Sikosek
[gmx-users] parallelization of processors on single system/node using MPI Richa Singh
[gmx-users] Avoiding domain decomposition error Ricardo Oliveira dos Santos Soares
[gmx-users] Avoiding domain decomposition error Ricardo Oliveira dos Santos Soares
[gmx-users] How to construct mixed lipid bilayer (Björn Sommer) Björn Sommer
[gmx-users] How to construct mixed lipid bilayer (Björn Sommer) Björn Sommer
[gmx-users] TFE-water simulation Archana Sonawani-Jagtap
[gmx-users] TFE-water simulation Archana Sonawani-Jagtap
[gmx-users] energy minimization erorr Archana Sonawani-Jagtap
[gmx-users] Gromacs 4.6 & 4.5.3 qualitative differences & 4.6 instability in polarizable force field vacuum/liquid mixture interface simulations David van der Spoel
[gmx-users] QM guy at wits' end David van der Spoel
[gmx-users] Charge correction PME David van der Spoel
[gmx-users] Gromacs-4.6 on two Titans GPUs James Starlight
[gmx-users] Gromacs-4.6 on two Titans GPUs James Starlight
[gmx-users] Gromacs-4.6 on two Titans GPUs James Starlight
[gmx-users] Gromacs-4.6 on two Titans GPUs James Starlight
[gmx-users] Re: Gromacs-4.6 on two Titans GPUs James Starlight
[gmx-users] Umbrella sampling along collective coordinate James Starlight
[gmx-users] Expanding of the boundaries of the enssemble James Starlight
[gmx-users] Expanding of the boundaries of the enssemble James Starlight
[gmx-users] Umbrella sampling along collective coordinate James Starlight
[gmx-users] REMD on GPU James Starlight
[gmx-users] Martini and Gromacs 3 and 4 Steve
[gmx-users] RDF normalization XUEMING TANG
[gmx-users] mdrun MUSYOKA THOMMAS
[gmx-users] mdrun MUSYOKA THOMMAS
[gmx-users] gromacs 4.6.4 version - nvt equilibration error MUSYOKA THOMMAS
[gmx-users] Analysis tools and triclinic boxes Stephanie Teich-McGoldrick
[gmx-users] Re: gmx-users Digest, Vol 115, Issue 16 Stephanie Teich-McGoldrick
[gmx-users] Diffusion/PBC Trayder Thomas
[gmx-users] (no subject) Surya Prakash Tiwari
[gmx-users] how to pull both side Tom
[gmx-users] How to construct mixed lipid bilayer Arun kumar V
[gmx-users] How to construct mixed lipid bilayer Arun kumar V
[gmx-users] step 0Segmentation fault: 11 (Mark Abraham) ERASTOVA V.
[gmx-users] Different Residues... Ramon Valencia
[gmx-users] step 0Segmentation fault: 11 Valentina
[gmx-users] step 0Segmentation fault: 11 Valentina
[gmx-users] step 0Segmentation fault: 11 Valentina
[gmx-users] step 0Segmentation fault: 11 Valentina
[gmx-users] Test particle insertion method Rafael I. Silverman y de la Vega
[gmx-users] Test particle insertion method Rafael I. Silverman y de la Vega
[gmx-users] extra gro file generation Mirco Wahab
[gmx-users] Windows/x64, VCVS2012 compiled, crash on checkpoint writing Mirco Wahab
[gmx-users] Calculation of water density around certain protein residues Dallas Warren
[gmx-users] Different Residues... Dallas Warren
[gmx-users] RE: Gibbs Energy Calculation and charges Dallas Warren
[gmx-users] RE: Gibbs Energy Calculation and charges Dallas Warren
[gmx-users] ERROR when generated a rtp file with "grompp" Dallas Warren
[gmx-users] can't find my protein pbd file in Protein data bank file Dallas Warren
[gmx-users] how to get Eigenvectors Tsjerk Wassenaar
[gmx-users] trjconv for pbc Tsjerk Wassenaar
[gmx-users] Diffusion/PBC Tsjerk Wassenaar
[gmx-users] Re: Bilayer COM removal issue: Large VCM Tsjerk Wassenaar
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69 Tsjerk Wassenaar
[gmx-users] problems with chain IDs for huge complex Tsjerk Wassenaar
[gmx-users] to study native cluster Tsjerk Wassenaar
[gmx-users] Martini and Gromacs 3 and 4 Tsjerk Wassenaar
[gmx-users] cluster-PCA Tsjerk Wassenaar
[gmx-users] the eigenvalue in the principle component analysis Tsjerk Wassenaar
[gmx-users] Fwd: Help on the vector component Tsjerk Wassenaar
[gmx-users] Fwd: Help on the vector component Tsjerk Wassenaar
[gmx-users] Normal Mode Analysis Tsjerk Wassenaar
[gmx-users] Normal Mode Analysis Tsjerk Wassenaar
[gmx-users] normal mode analysis Tsjerk Wassenaar
[gmx-users] Normal Mode Analysis Tsjerk Wassenaar
[gmx-users] Martini and Gromacs 3 and 4 Tsjerk Wassenaar
[gmx-users] retrieve box size from .trr or .tpr Tsjerk Wassenaar
[gmx-users] setting up simulation with mixed chain (nucleotide + amino acid) Tomek Wlodarski
[gmx-users] problems with chain IDs for huge complex Tomek Wlodarski
[gmx-users] problems with chain IDs for huge complex Tomek Wlodarski
[gmx-users] about using do_dssp for a few residues Xu, Jianqing
[gmx-users] about using do_dssp for a few residues Xu, Jianqing
[gmx-users] hydrogen bond calculation problem Sushma Yadav
[gmx-users] ERROR when generated a rtp file with "grompp" ookami a
[gmx-users] ERROR when generated a rtp file with "grompp" ookami a
[gmx-users] gromacs-4.6.4 with GPU aixintiankong
[gmx-users] gromacs-4.6.4 with GPU aixintiankong
[gmx-users] free energy landscape aixintiankong
[gmx-users] get a representative frame aixintiankong
[gmx-users] get a representative frame aixintiankong
[gmx-users] P-LINCS akn
[gmx-users] Reproducing results with independent runs alex.bjorling
[gmx-users] Help to simulate gas mixture ali.nazari
[gmx-users] switching from Group to Verlet: broken atoms on the box border andrea
[gmx-users] Re: Restarting a simulation after replacing an empty md.trr file arunjones
[gmx-users] Re: Restarting a simulation after replacing an empty md.trr file arunjones
[gmx-users] GMX manually generate topology for residues charles
[gmx-users] Re: segmentation fault on gromacs 4.5.5 after mdrun cjalmeciga
[gmx-users] Re: segmentation fault on gromacs 4.5.5 after mdrun cjalmeciga
[gmx-users] help about logfile cqgzc
[gmx-users] can not write coordinate file when running ibi cqgzc
[gmx-users] Re: Hardware for best gromacs performance? david.chalmers at monash.edu
[gmx-users] CHARMM .mdp settings for GPU rajat desikan
[gmx-users] Re: CHARMM .mdp settings for GPU rajat desikan
[gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets rajat desikan
[gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets rajat desikan
[gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets rajat desikan
[gmx-users] Re: CHARMM .mdp settings for GPU Rajat Desikan
[gmx-users] Bilayer COM removal issue: Large VCM rajat desikan
[gmx-users] Re: Bilayer COM removal issue: Large VCM rajat desikan
[gmx-users] Re: Bilayer COM removal issue: Large VCM rajat desikan
[gmx-users] Re: Bilayer COM removal issue: Large VCM rajat desikan
[gmx-users] How to construct mixed lipid bilayer rajat desikan
[gmx-users] nstlist and performances rajat desikan
[gmx-users] nstlist and performances rajat desikan
[gmx-users] Coulombic potential modifiers in Gromacs 4.6.4. rajat desikan
[gmx-users] Coulombic potential modifiers in Gromacs 4.6.4. rajat desikan
[gmx-users] Coulomb Long range using PME benrezkallah djamila
[gmx-users] Re: single point calculation with gromacs fantasticqhl
[gmx-users] about my single point calculation fantasticqhl
[gmx-users] help about logfile guozhicheng222
[gmx-users] help about ibi guozhicheng222
[gmx-users] coarse-grained MD simulation guozhicheng222
[gmx-users] Re: Calculation of water density around certain protein residues bharat gupta
[gmx-users] Re: Installation Gromacs 4.5.7 on rocluster cluster with centos 6.0 bharat gupta
[gmx-users] Fwd: Installation Gromacs 4.5.7 on rocluster cluster with centos 6.0 bharat gupta
[gmx-users] Calculation of water density around certain protein residues bharat gupta
[gmx-users] Re: Using gromacs on Rocks cluster bharat gupta
[gmx-users] Fwd: Using gromacs on Rocks cluster bharat gupta
[gmx-users] Re: Using mpirun on CentOS 6.0 bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Re: g_analyze bharat gupta
[gmx-users] Average number of salt bridge bharat gupta
[gmx-users] Average number of salt bridge bharat gupta
[gmx-users] Average number of salt bridge bharat gupta
[gmx-users] Average number of salt bridge bharat gupta
[gmx-users] Solvation free energy calculation for proteins bharat gupta
[gmx-users] Dihedral PCA bharat gupta
[gmx-users] Dihedral PCA bharat gupta
[gmx-users] Principal Component Analysis bharat gupta
[gmx-users] Extending Simulation bharat gupta
[gmx-users] Extending Simulation bharat gupta
[gmx-users] Dihedral PCA bharat gupta
[gmx-users] Can't do GB electrostatics; the implicit_genborn_params section of the forcefield is missing parameters for 9 atomtypes or they might be negative. sunita gupta
[gmx-users] Fwd: Can't do GB electrostatics; the implicit_genborn_params section of the forcefield is missing parameters for 9 atomtypes or they might be negative. sunita gupta
[gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 117 sunita gupta
[gmx-users] error while running pdb2gmx hasthi
[gmx-users] error in running pdb2gmx hasthi
[gmx-users] For GMX implicit solvent MD dxli75 at hotmail.com
[gmx-users] For GMX implicit solvent MD dxli75 at hotmail.com
[gmx-users] For GMX implicit solvent MD dxli75 at hotmail.com
[gmx-users] a query vsharma at imtech.res.in
[gmx-users] Cannot write trajectory frame; maybe you are out of disk space? vsharma at imtech.res.in
[gmx-users] gromacs 4.6.4 version - nvt equilibration error vsharma at imtech.res.in
[gmx-users] about using do_dssp for a few residues jianqing
[gmx-users] about using do_dssp for a few residues jianqing
[gmx-users] Re: Hardware for best gromacs performance? jonyer
[gmx-users] extra gro file generation sarah k
[gmx-users] extra gro file generation sarah k
[gmx-users] choosing force field pratibha kapoor
[gmx-users] membrane protein tutorial leila karami
[gmx-users] membrane protein tutorial leila karami
[gmx-users] Re: free energy kghm
[gmx-users] installation error under openSuse 12.2 kolnkempff
[gmx-users] Re: installation error under openSuse 12.2 kolnkempff
[gmx-users] topology for small peptide using amber03 kolnkempff
[gmx-users] pdb2gmx fails because of imaginary "Residue E" kolnkempff
[gmx-users] Restarting a simulation after replacing an empty md.trr file arun kumar
[gmx-users] ligand problem rajendra kumar
[gmx-users] how to get Eigenvectors nahren manuel
[gmx-users] (no subject) nahren manuel
[gmx-users] Conformational transition using essential dynamics nahren manuel
[gmx-users] Compiling GROMACS with fftw3 mcfc1301
[gmx-users] Compiling GROMACS with fftw3 mcfc1301
[gmx-users] Compiling GROMACS with fftw3 mcfc1301
[gmx-users] ligand problem kiana moghaddam
[gmx-users] ligand problem kiana moghaddam
[gmx-users] energy minimization problem kiana moghaddam
[gmx-users] Fw: energy minimization problem kiana moghaddam
[gmx-users] Fw: energy minimization problem kiana moghaddam
[gmx-users] free energy kiana moghaddam
[gmx-users] free energy kiana moghaddam
[gmx-users] gmx to amber kiana moghaddam
[gmx-users] pressure coupling kiana moghaddam
[gmx-users] Lysozyme in Water at different pH and Ionic strength jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] Energy minimization has stopped.... jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] GROMACS 4.6.4 is released jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] GROMACS 4.6.4 is released jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] a query jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] problems with chain IDs for huge complex jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] problems with chain IDs for huge complex jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] Invalid order for directive bondtypes jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] Mailing list archive jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] double precision and minimisation error jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] installing gromacs 4.6.1 with openmpi niloofar niknam
[gmx-users] Gromacs 4.6 & 4.5.3 qualitative differences & 4.6 instability in polarizable force field vacuum/liquid mixture interface simulations ploetz
[gmx-users] Re: choosing force field pratibha
[gmx-users] Re: choosing force field pratibha
[gmx-users] Re: choosing force field pratibha
[gmx-users] AMBER ff10 with Gromacs gromacs query
[gmx-users] flags for internal coordinates restraints gromacs query
[gmx-users] AMBER ff10 with Gromacs gromacs query
[gmx-users] (no subject) fatemeh ramezani
[gmx-users] trjconv for pbc rankinb
[gmx-users] Re: trjconv for pbc rankinb
[gmx-users] Re: trjconv for pbc rankinb
[gmx-users] Re: trjconv for pbc rankinb
[gmx-users] Re: trjconv for pbc rankinb
[gmx-users] Number of water molecules around any methyl carbon rankinb
Aw: [gmx-users] DPOSRES and energy minimization lloyd riggs
[gmx-users] cluster-PCA lloyd riggs
[gmx-users] How can I tell whether or not Gromacs was compiled with MPI? lloyd riggs
[gmx-users] Normal Mode Analysis lloyd riggs
[gmx-users] Normal Mode Analysis lloyd riggs
[gmx-users] Normal Mode Analysis lloyd riggs
[gmx-users] Charge correction PME lloyd riggs
[gmx-users] choosing force field massimo sandal
[gmx-users] Reg error in Compilation Of Gromacs 4.6.2 vidhya sankar
[gmx-users] About Compiler Compatibility for Gromacs 4.6.2 Compilation vidhya sankar
[gmx-users] after using ACPYPE , GROMACS OPLS itp file generated an atom type like opls_x with mass 0.000 aditya sarma
[gmx-users] Umbrella Sampling tutorial shahab shariati
[gmx-users] Umbrella Sampling tutorial shahab shariati
[gmx-users] Umbrella Sampling tutorial shahab shariati
[gmx-users] Umbrella Sampling tutorial shahab shariati
[gmx-users] Umbrella Sampling tutorial shahab shariati
[gmx-users] dihedral PCA simula_460
[gmx-users] Grompp error while using dual topology for free energy bipin singh
[gmx-users] Grompp error while using dual topology for free energy bipin singh
[gmx-users] Regarding soft-core potential bipin singh
[gmx-users] Regarding soft-core potential bipin singh
[gmx-users] Regarding soft-core potential bipin singh
[gmx-users] Warning while using g_bar bipin singh
[gmx-users] Warning while using g_bar bipin singh
[gmx-users] Regarding soft core parameter: Relative solvation free energy calculation bipin singh
[gmx-users] Regarding soft core parameter: Relative solvation free energy calculation bipin singh
[gmx-users] Regarding soft core parameter: Relative solvation free energy calculation bipin singh
[gmx-users] Regarding soft core parameter: Relative solvation free energy calculation bipin singh
[gmx-users] Regarding soft core parameter: Relative solvation free energy calculation bipin singh
[gmx-users] Problem compiling Gromacs 4.6.3 with CUDA ahmed.sajid at stfc.ac.uk
[gmx-users] Membrane is shifted a lot during umbrella sampling sudipta
[gmx-users] Membrane is shifted a lot during umbrella sampling sudipta
[gmx-users] Implicit solvent simulation of protein folding tsikosek
[gmx-users] installation error : mpi compiler not found vansh
[gmx-users] error with make install command vansh
[gmx-users] installing latest version of gromacs 4.6.3 vansh
[gmx-users] Cannot write trajectory frame; maybe you are out of disk space? vansh
[gmx-users] installing latest version of gromacs 4.6.3 vansh
[gmx-users] installing latest version of gromacs 4.6.3 vansh
[gmx-users] a query vansh
[gmx-users] Compiling GROMACS with fftw3 vansh
[gmx-users] gromacs 4.6.4 version - nvt equilibration error vansh
[gmx-users] gromacs 4.6.4 version - nvt equilibration error vansh
[gmx-users] gromacs 4.6.4 version - nvt equilibration error vansh
[gmx-users] ligand-protein simulation xiao
[gmx-users] Lysozyme in Water at different pH and Ionic strength xiao
[gmx-users] ligand-protein simulation xiao
[gmx-users] restart failed xiao
[gmx-users] failed restart xiao
[gmx-users] the eigenvalue in the principle component analysis xiao
[gmx-users] normal mode analysis xiao
[gmx-users] shear viscosity Ahmet yıldırım
[gmx-users] viscosity of spc water model Ahmet yıldırım
[gmx-users] viscosity of spc water model Ahmet yıldırım
[gmx-users] Test particle insertion method jinhong zhou
[gmx-users] Test particle insertion method jinhong zhou
[gmx-users] g_select SEMRAN İPEK
[gmx-users] g_select SEMRAN İPEK
[gmx-users] How to add motion of center of mass into temperature coupling? 李亚东
[gmx-users] a way to constraint molecules(make rigid CS2) 조주연

Last message date: Sat Nov 30 21:59:23 CET 2013
Archived on: Sat Nov 30 21:59:23 CET 2013

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