November 2013 Archives by thread

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Starting: Fri Nov 1 00:03:29 CET 2013
Ending: Sat Nov 30 21:59:23 CET 2013
Messages: 761

• [gmx-users] problem vwith ethanol-water solution   Ehsan Sadeghi
  • [gmx-users] problem vwith ethanol-water solution   Justin Lemkul
• [gmx-users] Hardware for best gromacs performance?   David Chalmers
  • [gmx-users] Re: Hardware for best gromacs performance?   Brad Van Oosten
    • [gmx-users] Re: Hardware for best gromacs performance?   jonyer
      • [gmx-users] Re: Hardware for best gromacs performance?   Timo Graen
      • [gmx-users] Re: Hardware for best gromacs performance?   Timo Graen
      • [gmx-users] Re: Hardware for best gromacs performance?   Szilárd Páll
      • [gmx-users] Re: Hardware for best gromacs performance?   Dwey Kauffman
      • [gmx-users] Re: Hardware for best gromacs performance?   Szilárd Páll
      • [gmx-users] Re: Hardware for best gromacs performance?   Dwey Kauffman
      • [gmx-users] Re: Hardware for best gromacs performance?   Mark Abraham
    • [gmx-users] Re: Hardware for best gromacs performance?   Szilárd Páll
  • [gmx-users] Hardware for best gromacs performance?   Szilárd Páll
    • [gmx-users] Re: Hardware for best gromacs performance?   david.chalmers at monash.edu
• [gmx-users] probability distribution of bond distance/length   Xu Dong Huang
  • [gmx-users] probability distribution of bond distance/length   Mark Abraham
• [gmx-users] how to get Eigenvectors   nahren manuel
  • [gmx-users] how to get Eigenvectors   Tsjerk Wassenaar
• [gmx-users] GMX manually generate topology for residues   charles
  • [gmx-users] GMX manually generate topology for residues   Mark Abraham
• [gmx-users] ligand-protein simulation   xiao
  • [gmx-users] ligand-protein simulation   Justin Lemkul
    • [gmx-users] ligand-protein simulation   xiao
• [gmx-users] Lysozyme in Water at different pH and Ionic strength   Mass
  • [gmx-users] Lysozyme in Water at different pH and Ionic strength   xiao
    • [gmx-users] Lysozyme in Water at different pH and Ionic strength   Justin Lemkul
      • [gmx-users] Lysozyme in Water at different pH and Ionic strength   Luís Carlos Filipe
      • [gmx-users] Lysozyme in Water at different pH and Ionic strength   jkrieger at mrc-lmb.cam.ac.uk
• [gmx-users] Gibbs Energy Calculation and charges   Christopher Neale
  • [gmx-users] RE: Gibbs Energy Calculation and charges   Dallas Warren
• [gmx-users] ligand problem   kiana moghaddam
• [gmx-users] g_lie and ligand only simulation   Kavyashree M
  • [gmx-users] g_lie and ligand only simulation   Justin Lemkul
• [gmx-users] g_lie and ligand only simulation   Kavyashree M
  • [gmx-users] g_lie and ligand only simulation   Justin Lemkul
    • [gmx-users] g_lie and ligand only simulation   Kavyashree M
      • [gmx-users] g_lie and ligand only simulation   Justin Lemkul
      • [gmx-users] g_lie and ligand only simulation   Kavyashree M
      • [gmx-users] g_lie and ligand only simulation   Kavyashree M
      • [gmx-users] g_lie and ligand only simulation   Kavyashree M
      • [gmx-users] g_lie and ligand only simulation   Justin Lemkul
      • [gmx-users] g_lie and ligand only simulation   Kavyashree M
• [gmx-users] Re: RNA simulation (Justin Lemkul)   Hossein Lanjanian
  • [gmx-users] Re: RNA simulation (Justin Lemkul)   Justin Lemkul
• [gmx-users] ligand problem   kiana moghaddam
  • [gmx-users] ligand problem   rajendra kumar
• [gmx-users] trjconv for pbc   rankinb
  • [gmx-users] trjconv for pbc   Tsjerk Wassenaar
  • [gmx-users] Re: trjconv for pbc   rankinb
    • [gmx-users] Re: trjconv for pbc   Justin Lemkul
      • [gmx-users] Re: trjconv for pbc   rankinb
      • [gmx-users] Re: trjconv for pbc   Justin Lemkul
      • [gmx-users] Re: trjconv for pbc   rankinb
      • [gmx-users] Re: trjconv for pbc   Justin Lemkul
  • [gmx-users] Re: trjconv for pbc   rankinb
• [gmx-users] Gromacs 4.6 & 4.5.3 qualitative differences & 4.6 instability in polarizable force field vacuum/liquid mixture interface simulations   ploetz
  • [gmx-users] Gromacs 4.6 & 4.5.3 qualitative differences & 4.6 instability in polarizable force field vacuum/liquid mixture interface simulations   David van der Spoel
• [gmx-users] energy minimization problem   kiana moghaddam
  • [gmx-users] energy minimization problem   Justin Lemkul
• [gmx-users] No Distribution?   Xu Dong Huang
  • [gmx-users] No Distribution?   Justin Lemkul
    • [gmx-users] No Distribution?   Xu Dong Huang
      • [gmx-users] No Distribution?   Justin Lemkul
      • [gmx-users] No Distribution?   Xu Dong Huang
      • [gmx-users] No Distribution?   Justin Lemkul
      • [gmx-users] No Distribution?   Xu Dong Huang
      • [gmx-users] DPOSRES and energy minimization   Gianluca Interlandi
      • Aw: [gmx-users] DPOSRES and energy minimization   lloyd riggs
      • [gmx-users] DPOSRES and energy minimization   Justin Lemkul
      • [gmx-users] DPOSRES and energy minimization   Gianluca Interlandi
      • [gmx-users] DPOSRES and energy minimization   Justin Lemkul
      • [gmx-users] nose-hoover vs v-rescale in implicit solvent   Gianluca Interlandi
      • [gmx-users] nose-hoover vs v-rescale in implicit solvent   Mark Abraham
• [gmx-users] Gromacs-4.6 on two Titans GPUs   James Starlight
  • [gmx-users] Gromacs-4.6 on two Titans GPUs   Szilárd Páll
    • [gmx-users] Gromacs-4.6 on two Titans GPUs   James Starlight
      • [gmx-users] Gromacs-4.6 on two Titans GPUs   Szilárd Páll
      • [gmx-users] Gromacs-4.6 on two Titans GPUs   James Starlight
      • [gmx-users] Gromacs-4.6 on two Titans GPUs   Richard Broadbent
      • [gmx-users] Gromacs-4.6 on two Titans GPUs   James Starlight
      • [gmx-users] Gromacs-4.6 on two Titans GPUs   Mark Abraham
• [gmx-users] energy minimization problem   Justin Lemkul
• [gmx-users] Help to simulate gas mixture   ali.nazari
  • [gmx-users] Help to simulate gas mixture   Mark Abraham
• [gmx-users] g_lie useage   Saman Shahriyari
  • [gmx-users] g_lie useage   Justin Lemkul
• [gmx-users] Re: Calculation of water density around certain protein residues   bharat gupta
• [gmx-users] Different Residues...   Ramon Valencia
  • [gmx-users] Different Residues...   Justin Lemkul
  • [gmx-users] Different Residues...   Dallas Warren
• [gmx-users] Fw: energy minimization problem   kiana moghaddam
  • [gmx-users] Fw: energy minimization problem   Justin Lemkul
    • [gmx-users] Fw: energy minimization problem   kiana moghaddam
      • [gmx-users] Fw: energy minimization problem   Justin Lemkul
• [gmx-users] TFE-water simulation   João Henriques
  • [gmx-users] TFE-water simulation   João Henriques
  • [gmx-users] TFE-water simulation   Archana Sonawani-Jagtap
    • [gmx-users] TFE-water simulation   Archana Sonawani-Jagtap
      • [gmx-users] TFE-water simulation   João Henriques
• [gmx-users] gmxcheck   Ankita Naithani
  • [gmx-users] gmxcheck   Justin Lemkul
    • [gmx-users] gmxcheck   Ankita Naithani
      • [gmx-users] gmxcheck   Justin Lemkul
      • [gmx-users] gmxcheck   Ankita Naithani
      • [gmx-users] gmxcheck   Justin Lemkul
      • [gmx-users] gmxcheck   Ankita Naithani
• [gmx-users] Re: Installation Gromacs 4.5.7 on rocluster cluster with centos 6.0   bharat gupta
  • [gmx-users] Fwd: Installation Gromacs 4.5.7 on rocluster cluster with centos 6.0   bharat gupta
  • [gmx-users] Re: Installation Gromacs 4.5.7 on rocluster cluster with centos 6.0   Mark Abraham
• [gmx-users] Wall potential for a membrane simulation   Marianne Schulte
• [gmx-users] Calculation of water density around certain protein residues   bharat gupta
  • [gmx-users] Calculation of water density around certain protein residues   Dallas Warren
• [gmx-users] Group protein not found in indexfile   Steve Seibold
  • [gmx-users] Group protein not found in indexfile   Justin Lemkul
• [gmx-users] Analysis tools and triclinic boxes   Stephanie Teich-McGoldrick
  • [gmx-users] Analysis tools and triclinic boxes   Justin Lemkul
  • [gmx-users] Analysis tools and triclinic boxes   Mark Abraham
• [gmx-users] Gentle heating with implicit solvent   Gianluca Interlandi
  • [gmx-users] Gentle heating with implicit solvent   Justin Lemkul
    • [gmx-users] Gentle heating with implicit solvent   Gianluca Interlandi
      • [gmx-users] Gentle heating with implicit solvent   Gianluca Interlandi
• [gmx-users] Group protein not found in indexfile   Steve Seibold
  • [gmx-users] Group protein not found in indexfile   Justin Lemkul
• [gmx-users] .top file for a mixed solvent   Ehsan Sadeghi
  • [gmx-users] .top file for a mixed solvent   Justin Lemkul
• [gmx-users] Re: Using gromacs on Rocks cluster   bharat gupta
  • [gmx-users] Fwd: Using gromacs on Rocks cluster   bharat gupta
  • [gmx-users] Re: Using gromacs on Rocks cluster   Mark Abraham
• [gmx-users] choosing force field   pratibha kapoor
  • [gmx-users] choosing force field   massimo sandal
    • [gmx-users] Re: choosing force field   pratibha
      • [gmx-users] Re: choosing force field   Justin Lemkul
      • [gmx-users] Re: choosing force field   pratibha
      • [gmx-users] Re: choosing force field   Justin Lemkul
      • [gmx-users] Re: choosing force field   pratibha
• [gmx-users] Diffusion/PBC   Debashis Sahu
  • [gmx-users] Diffusion/PBC   Tsjerk Wassenaar
    • [gmx-users] Diffusion/PBC   Trayder Thomas
      • [gmx-users] Diffusion/PBC   Debashis Sahu
• [gmx-users] Re: Using mpirun on CentOS 6.0   bharat gupta
• [gmx-users] free energy   kiana moghaddam
  • [gmx-users] free energy   Justin Lemkul
    • [gmx-users] free energy   Kieu Thu Nguyen
      • [gmx-users] Re: free energy   kghm
• [gmx-users] extra gro file generation   sarah k
  • [gmx-users] extra gro file generation   Riccardo Concu
  • [gmx-users] extra gro file generation   Mirco Wahab
• [gmx-users] Energy minimization has stopped....   Kalyanashis Jana
  • [gmx-users] Energy minimization has stopped....   jkrieger at mrc-lmb.cam.ac.uk
    • [gmx-users] Re: Energy minimization has stopped....   Kalyanashis
      • [gmx-users] Re: Energy minimization has stopped....   Justin Lemkul
  • [gmx-users] Energy minimization has stopped....   Justin Lemkul
    • [gmx-users] Energy minimization has stopped....   Kalyanashis Jana
      • [gmx-users] Energy minimization has stopped....   Justin Lemkul
• [gmx-users] mdrun   MUSYOKA THOMMAS
  • [gmx-users] mdrun   Justin Lemkul
    • [gmx-users] mdrun   MUSYOKA THOMMAS
• [gmx-users] CHARMM .mdp settings for GPU   rajat desikan
  • [gmx-users] Re: CHARMM .mdp settings for GPU   Rajat Desikan
    • [gmx-users] Re: CHARMM .mdp settings for GPU   Mark Abraham
      • [gmx-users] Re: CHARMM .mdp settings for GPU   rajat desikan
      • [gmx-users] Re: CHARMM .mdp settings for GPU   Mark Abraham
      • [gmx-users] Re: CHARMM .mdp settings for GPU   Gianluca Interlandi
      • [gmx-users] Re: CHARMM .mdp settings for GPU   Rajat Desikan
      • [gmx-users] Re: CHARMM .mdp settings for GPU   Justin Lemkul
      • [gmx-users] Re: CHARMM .mdp settings for GPU   Rajat Desikan
      • [gmx-users] Re: CHARMM .mdp settings for GPU   Justin Lemkul
• [gmx-users] Re: Replacing atom   J Alizadeh
  • [gmx-users] Re: Replacing atom   Justin Lemkul
• [gmx-users] extra gro file generation   sarah k
• [gmx-users] Re: Gromacs-4.6 on two Titans GPUs   Dwey
  • [gmx-users] Re: Gromacs-4.6 on two Titans GPUs   Szilárd Páll
    • [gmx-users] Re: Gromacs-4.6 on two Titans GPUs   Dwey Kauffman
      • [gmx-users] Re: Gromacs-4.6 on two Titans GPUs   Richard Broadbent
      • [gmx-users] Re: Gromacs-4.6 on two Titans GPUs   James Starlight
      • [gmx-users] Re: Gromacs-4.6 on two Titans GPUs   Mark Abraham
      • [gmx-users] Re: Gromacs-4.6 on two Titans GPUs   Szilárd Páll
• [gmx-users] RE: Gibbs Energy Calculation and charges   Dallas Warren
• [gmx-users] Re: gmx-users Digest, Vol 115, Issue 16   Stephanie Teich-McGoldrick
  • [gmx-users] Re: Analysis tools and triclinic boxes   Justin Lemkul
• [gmx-users] (no subject)   nahren manuel
• [gmx-users] Conformational transition using essential dynamics   nahren manuel
• [gmx-users] Re: single point calculation with gromacs   fantasticqhl
  • [gmx-users] Re: single point calculation with gromacs   Mark Abraham
• [gmx-users] Number of water molecules around any methyl carbon   rankinb
  • [gmx-users] Number of water molecules around any methyl carbon   Justin Lemkul
  • [gmx-users] Number of water molecules around any methyl carbon   Mark Abraham
• [gmx-users] Enterobactin binding to Iron(III)   Jonathan Saboury
• [gmx-users] stopped simulation   Ehsan Sadeghi
  • [gmx-users] stopped simulation   Justin Lemkul
    • [gmx-users] stopped simulation   Ehsan Sadeghi
      • [gmx-users] stopped simulation   Justin Lemkul
      • [gmx-users] stopped simulation   Ehsan Sadeghi
      • [gmx-users] stopped simulation   Justin Lemkul
      • [gmx-users] stopped simulation   Mark Abraham
      • [gmx-users] stopped simulation   Justin Lemkul
• [gmx-users] Group protein not found in indexfile   Steve Seibold
  • [gmx-users] Group protein not found in indexfile   Justin Lemkul
• [gmx-users] About g_potential   Guangwei Jiang
• [gmx-users] Error in Umbrella sampling command   Arunima Shilpi
  • [gmx-users] Error in Umbrella sampling command   Justin Lemkul
• [gmx-users] DSSP output   Anirban
  • [gmx-users] DSSP output   Justin Lemkul
• [gmx-users] Problem compiling Gromacs 4.6.3 with CUDA   ahmed.sajid at stfc.ac.uk
  • [gmx-users] Problem compiling Gromacs 4.6.3 with CUDA   Mark Abraham
    • [gmx-users] Problem compiling Gromacs 4.6.3 with CUDA   Jones de Andrade
      • [gmx-users] Problem compiling Gromacs 4.6.3 with CUDA   Mark Abraham
      • [gmx-users] Problem compiling Gromacs 4.6.3 with CUDA   Jones de Andrade
      • [gmx-users] Problem compiling Gromacs 4.6.3 with CUDA   Mark Abraham
      • [gmx-users] Problem compiling Gromacs 4.6.3 with CUDA   Jones de Andrade
• [gmx-users] installing gromacs 4.6.1 with openmpi   niloofar niknam
  • [gmx-users] installing gromacs 4.6.1 with openmpi   Mark Abraham
• [gmx-users] Re: LIE method with PME   Williams Ernesto Miranda Delgado
  • [gmx-users] Re: LIE method with PME   Mark Abraham
• mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs)   Szilárd Páll
  • mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs)   Dwey Kauffman
    • mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs)   Mark Abraham
    • mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs)   Szilárd Páll
      • mdrun on 8-core AMD + GTX TITAN (was: Re: [gmx-users] Re: Gromacs-4.6 on two Titans GPUs)   Dwey Kauffman
• [gmx-users] Re: LIE method with PME   Williams Ernesto Miranda Delgado
  • [gmx-users] Re: LIE method with PME   Mark Abraham
• [gmx-users] Question about make_ndx and g_angle   Chang Woon Jang
  • [gmx-users] Question about make_ndx and g_angle   Riccardo Concu
    • [gmx-users] Question about make_ndx and g_angle   Chang Woon Jang
• [gmx-users] after using ACPYPE , GROMACS OPLS itp file generated an atom type like opls_x with mass 0.000   aditya sarma
  • [gmx-users] after using ACPYPE , GROMACS OPLS itp file generated an atom type like opls_x with mass 0.000   Alan
• [gmx-users] mpi segmentation error in continuation of REMD simulation with gromacs 4.5.5   Qin Qiao
  • [gmx-users] mpi segmentation error in continuation of REMD simulation with gromacs 4.5.5   Mark Abraham
    • [gmx-users] mpi segmentation error in continuation of REMD simulation with gromacs 4.5.5   Qin Qiao
      • [gmx-users] mpi segmentation error in continuation of REMD simulation with gromacs 4.5.5   Mark Abraham
• [gmx-users] Ligand simulation   Kavyashree M
• [gmx-users] Reg error in Compilation Of Gromacs 4.6.2   vidhya sankar
  • [gmx-users] Reg error in Compilation Of Gromacs 4.6.2   Justin Lemkul
• [gmx-users] Looking for advice on Monte Carlo simulations, please   Andrew DeYoung
  • [gmx-users] Looking for advice on Monte Carlo simulations, please   Andrew S. Paluch
• [gmx-users] Simulation box size, LIE and PME   Williams Ernesto Miranda Delgado
  • [gmx-users] Simulation box size, LIE and PME   Justin Lemkul
• [gmx-users] Re: Ligand simulation for LIE with PME   Williams Ernesto Miranda Delgado
  • [gmx-users] Re: Ligand simulation for LIE with PME   Justin Lemkul
• [gmx-users] Reaction field zero, ions, twin-range and LIE   Williams Ernesto Miranda Delgado
• [gmx-users] free energy   kiana moghaddam
• [gmx-users] Reproducing results with independent runs   alex.bjorling
  • [gmx-users] Reproducing results with independent runs   Mark Abraham
• [gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets   rajat desikan
  • [gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets   Justin Lemkul
    • [gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets   rajat desikan
      • [gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets   Justin Lemkul
      • [gmx-users] Trouble calculating MSD after removing COM for upper and lower leaflets   rajat desikan
• [gmx-users] Umbrella Sampling tutorial   shahab shariati
  • [gmx-users] Umbrella Sampling tutorial   Justin Lemkul
• [gmx-users] Umbrella Sampling tutorial   shahab shariati
  • [gmx-users] Umbrella Sampling tutorial   Justin Lemkul
• [gmx-users] Re: CHARMM .mdp settings for GPU   Gianluca Interlandi
  • [gmx-users] Re: CHARMM .mdp settings for GPU   Justin Lemkul
• [gmx-users] Re: g_analyze   bharat gupta
  • [gmx-users] Re: g_analyze   Justin Lemkul
    • [gmx-users] Re: g_analyze   bharat gupta
      • [gmx-users] Re: g_analyze   Justin Lemkul
      • [gmx-users] Re: g_analyze   bharat gupta
      • [gmx-users] Re: g_analyze   Justin Lemkul
      • [gmx-users] Re: g_analyze   bharat gupta
      • [gmx-users] Re: g_analyze   Justin Lemkul
      • [gmx-users] Re: g_analyze   bharat gupta
      • [gmx-users] Re: g_analyze   bharat gupta
      • [gmx-users] Re: g_analyze   Justin Lemkul
      • [gmx-users] Re: g_analyze   bharat gupta
      • [gmx-users] Re: g_analyze   bharat gupta
      • [gmx-users] Re: g_analyze   Justin Lemkul
      • [gmx-users] Re: g_analyze   bharat gupta
      • [gmx-users] Re: g_analyze   Justin Lemkul
      • [gmx-users] Re: g_analyze   Justin Lemkul
      • [gmx-users] Re: g_analyze   Justin Lemkul
• [gmx-users] About Compiler Compatibility for Gromacs 4.6.2 Compilation   vidhya sankar
• [gmx-users] About Compiler Compatibility for Gromacs 4.6.2 Compilation   Mark Abraham
• [gmx-users] Umbrella Sampling tutorial   shahab shariati
  • [gmx-users] Umbrella Sampling tutorial   Justin Lemkul
• [gmx-users] problem in running mdrun command   S.Chandra Shekar
  • [gmx-users] problem in running mdrun command   Mark Abraham
• [gmx-users] Umbrella Sampling tutorial   shahab shariati
  • [gmx-users] Umbrella Sampling tutorial   Justin Lemkul
• [gmx-users] Bilayer COM removal issue: Large VCM   rajat desikan
  • [gmx-users] Re: Bilayer COM removal issue: Large VCM   rajat desikan
    • [gmx-users] Re: Bilayer COM removal issue: Large VCM   Tsjerk Wassenaar
      • [gmx-users] Re: Bilayer COM removal issue: Large VCM   rajat desikan
      • [gmx-users] Re: Bilayer COM removal issue: Large VCM   rajat desikan
• [gmx-users] Re: Thankful   Williams Ernesto Miranda Delgado
• [gmx-users] help about logfile   guozhicheng222
  • [gmx-users] help about logfile   Justin Lemkul
    • [gmx-users] help about logfile   cqgzc
      • [gmx-users] help about logfile   Justin Lemkul
• [gmx-users] segmentation fault on gromacs 4.5.5 after mdrun   Carlos Javier Almeciga Diaz
  • [gmx-users] segmentation fault on gromacs 4.5.5 after mdrun   Justin Lemkul
    • [gmx-users] Re: segmentation fault on gromacs 4.5.5 after mdrun   cjalmeciga
      • [gmx-users] Re: segmentation fault on gromacs 4.5.5 after mdrun   Justin Lemkul
      • [gmx-users] Re: segmentation fault on gromacs 4.5.5 after mdrun   cjalmeciga
      • [gmx-users] Re: segmentation fault on gromacs 4.5.5 after mdrun   Justin Lemkul
• [gmx-users] installation error under openSuse 12.2   kolnkempff
  • [gmx-users] installation error under openSuse 12.2   Justin Lemkul
    • [gmx-users] Re: installation error under openSuse 12.2   kolnkempff
• [gmx-users] Re: Reaction field zero and ions   Williams Ernesto Miranda Delgado
  • [gmx-users] Re: Reaction field zero and ions   Justin Lemkul
    • [gmx-users] Re: Reaction field zero and ions   Dr. Vitaly Chaban
• [gmx-users] hydrogen bond calculation problem   Sushma Yadav
  • [gmx-users] hydrogen bond calculation problem   Justin Lemkul
• [gmx-users] installation error under openSuse 12.2   Christoph Junghans
• [gmx-users] Calculating diffusion coefficient in three dimension   Venkat Reddy
  • [gmx-users] Calculating diffusion coefficient in three dimension   Dr. Vitaly Chaban
    • [gmx-users] Calculating diffusion coefficient in three dimension   Venkat Reddy
      • [gmx-users] Calculating diffusion coefficient in three dimension   Justin Lemkul
      • [gmx-users] Calculating diffusion coefficient in three dimension   Venkat Reddy
      • [gmx-users] Calculating diffusion coefficient in three dimension   Justin Lemkul
      • [gmx-users] Calculating diffusion coefficient in three dimension   Venkat Reddy
      • [gmx-users] Calculating diffusion coefficient in three dimension   Justin Lemkul
      • [gmx-users] Calculating diffusion coefficient in three dimension   Venkat Reddy
      • [gmx-users] Calculating diffusion coefficient in three dimension   Justin Lemkul
      • [gmx-users] Calculating diffusion coefficient in three dimension   Thomas Piggot
      • [gmx-users] Calculating diffusion coefficient in three dimension   Venkat Reddy
      • [gmx-users] Calculating diffusion coefficient in three dimension   Justin Lemkul
      • [gmx-users] Calculating diffusion coefficient in three dimension   Venkat Reddy
      • [gmx-users] Calculating diffusion coefficient in three dimension   Justin Lemkul
• [gmx-users] Restarting a simulation after replacing an empty md.trr file   arun kumar
  • [gmx-users] Restarting a simulation after replacing an empty md.trr file   Justin Lemkul
    • [gmx-users] Re: Restarting a simulation after replacing an empty md.trr file   arunjones
      • [gmx-users] Re: Restarting a simulation after replacing an empty md.trr file   Justin Lemkul
      • [gmx-users] Re: Restarting a simulation after replacing an empty md.trr file   arunjones
      • [gmx-users] Re: Restarting a simulation after replacing an empty md.trr file   Justin Lemkul
• [gmx-users] Re: ok, thank you   Williams Ernesto Miranda Delgado
• [gmx-users] Invalid order for directive defaults   Atila Petrosian
  • [gmx-users] Invalid order for directive defaults   Justin Lemkul
• [gmx-users] Change in the positon of structural Zinc and calcium ions during MD   Rama
  • [gmx-users] Change in the positon of structural Zinc and calcium ions during MD   Justin Lemkul
    • [gmx-users] Re: Change in the position of structural Zinc and calcium ions during MD   Rama
      • [gmx-users] Re: Change in the position of structural Zinc and calcium ions during MD   Justin Lemkul
• [gmx-users] help about ibi   guozhicheng222
  • [gmx-users] help about ibi   Mark Abraham
• [gmx-users] Invalid order for directive defaults   Atila Petrosian
  • [gmx-users] Invalid order for directive defaults   Justin Lemkul
• [gmx-users] error while running pdb2gmx   hasthi
  • [gmx-users] error while running pdb2gmx   Justin Lemkul
  • [gmx-users] error while running pdb2gmx   Mark Abraham
• [gmx-users] Invalid order for directive defaults   Atila Petrosian
• [gmx-users] about my single point calculation   fantasticqhl
• [gmx-users] How to construct mixed lipid bilayer   Nikhil Agrawal
  • [gmx-users] How to construct mixed lipid bilayer   Arun kumar V
    • [gmx-users] How to construct mixed lipid bilayer   Arun kumar V
  • [gmx-users] How to construct mixed lipid bilayer   rajat desikan
• [gmx-users] Recompile Gromacs 4.6.3   Jheng Wei Li
  • [gmx-users] Recompile Gromacs 4.6.3   Mark Abraham
  • [gmx-users] Recompile Gromacs 4.6.3   Jheng Wei Li
• [gmx-users] Invalid order for directive defaults   Atila Petrosian
  • [gmx-users] Invalid order for directive defaults   Justin Lemkul
• [gmx-users] Invalid order for directive defaults   Atila Petrosian
  • [gmx-users] Invalid order for directive defaults   Justin Lemkul
• [gmx-users] GROMACS 4.6.4 is released   Mark Abraham
  • [gmx-users] GROMACS 4.6.4 is released   jkrieger at mrc-lmb.cam.ac.uk
    • [gmx-users] GROMACS 4.6.4 is released   Mark Abraham
      • [gmx-users] GROMACS 4.6.4 is released   jkrieger at mrc-lmb.cam.ac.uk
• [gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs   Prajapati, Jigneshkumar Dahyabhai
  • [gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs   Carsten Kutzner
    • [gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs   Prajapati, Jigneshkumar Dahyabhai
      • [gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs   Mark Abraham
  • [gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs   Szilárd Páll
    • [gmx-users] GROMACS-4.6.3 CUDA version on multiple nodes each having 2 GPUs   Prajapati, Jigneshkumar Dahyabhai
• [gmx-users] (no subject)   Shine A
• [gmx-users] remd   Shine A
  • [gmx-users] remd   Justin Lemkul
  • [gmx-users] remd   Mark Abraham
  • [gmx-users] Fwd: remd   Shine A
• [gmx-users] shear viscosity   Ahmet yıldırım
• [gmx-users] mailing list migration   Rossen Apostolov
• [gmx-users] (no subject)   Raj K
  • [gmx-users] (no subject)   Surya Prakash Tiwari
• [gmx-users] Recompile Gromacs 4.6.3   Jheng Wei Li
• [gmx-users] installation error : mpi compiler not found   vansh
• [gmx-users] error with make install command   vansh
• [gmx-users] gmx to amber   kiana moghaddam
• [gmx-users] Average number of salt bridge   bharat gupta
  • [gmx-users] Average number of salt bridge   Justin Lemkul
    • [gmx-users] Average number of salt bridge   bharat gupta
• [gmx-users] h-bond in g_hbond   Raghunath Satpathy
• [gmx-users] about using do_dssp for a few residues   Xu, Jianqing
• [gmx-users] g_select   SEMRAN İPEK
  • [gmx-users] g_select   Justin Lemkul
    • [gmx-users] g_select   SEMRAN İPEK
• [gmx-users] h-bond in g_hbond   Mark Abraham
• [gmx-users] Average number of salt bridge   bharat gupta
• [gmx-users] test 2, please ignore   Rossen Apostolov
• [gmx-users] RF0 and g_energy   Williams Ernesto Miranda Delgado
  • [gmx-users] RF0 and g_energy   Justin Lemkul
• [gmx-users] How to construct mixed lipid bilayer (Björn Sommer)   Björn Sommer
• [gmx-users] membrane protein tutorial   leila karami
  • [gmx-users] membrane protein tutorial   Justin Lemkul
• [gmx-users] about using do_dssp for a few residues   jianqing
  • [gmx-users] about using do_dssp for a few residues   jianqing
    • [gmx-users] about using do_dssp for a few residues   Justin Lemkul
      • [gmx-users] about using do_dssp for a few residues   Xu, Jianqing
• [gmx-users] Windows/x64, VCVS2012 compiled, crash on checkpoint writing   Mirco Wahab
  • [gmx-users] Windows/x64, VCVS2012 compiled, crash on checkpoint writing   Mark Abraham
• [gmx-users] RF0 and g_energy   Williams Ernesto Miranda Delgado
• [gmx-users] restart failed   xiao
  • [gmx-users] restart failed   Mark Abraham
• [gmx-users] failed restart   xiao
• [gmx-users] membrane protein tutorial   leila karami
• [gmx-users] How to construct mixed lipid bilayer (Björn Sommer)   Björn Sommer
• [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 68   Raghunath Satpathy
• [gmx-users] simulated annealing   Justin Lemkul
• [gmx-users] installing latest version of gromacs 4.6.3   vansh
  • [gmx-users] installing latest version of gromacs 4.6.3   Luís Pereira
    • [gmx-users] installing latest version of gromacs 4.6.3   vansh
      • [gmx-users] installing latest version of gromacs 4.6.3   Justin Lemkul
  • [gmx-users] installing latest version of gromacs 4.6.3   Mark Abraham
  • [gmx-users] installing latest version of gromacs 4.6.3   vansh
    • [gmx-users] installing latest version of gromacs 4.6.3   Mark Abraham
• [gmx-users] how to pull both side   Tom
  • [gmx-users] how to pull both side   Justin Lemkul
• [gmx-users] Replicating triclinic unit cells   Eudes Fileti
  • [gmx-users] Replicating triclinic unit cells   Mark Abraham
• [gmx-users] Average number of salt bridge   bharat gupta
• [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69   Hari Pandey
  • [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69   Tsjerk Wassenaar
    • [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69   Hari Pandey
      • [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69   Justin Lemkul
      • [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 69   Mark Abraham
• [gmx-users] Cannot write trajectory frame; maybe you are out of disk space?   vansh
  • [gmx-users] Cannot write trajectory frame; maybe you are out of disk space?   Mark Abraham
• [gmx-users] can not write coordinate file when running ibi   cqgzc
  • [gmx-users] can not write coordinate file when running ibi   Chandan Choudhury
• [gmx-users] a query   vsharma at imtech.res.in
  • [gmx-users] a query   jkrieger at mrc-lmb.cam.ac.uk
    • [gmx-users] a query   vansh
• [gmx-users] energy minimization erorr   Archana Sonawani-Jagtap
  • [gmx-users] energy minimization erorr   Justin Lemkul
• [gmx-users] test gmx-users, please ignore   Rossen Apostolov
• [gmx-users] cut-off for different groups GROMACS 4.6.3   Jheng Wei Li
  • [gmx-users] cut-off for different groups GROMACS 4.6.3   Mark Abraham
  • [gmx-users] cut-off for different groups GROMACS 4.6.3   Jheng Wei Li
    • [gmx-users] cut-off for different groups GROMACS 4.6.3   Justin Lemkul
    • [gmx-users] cut-off for different groups GROMACS 4.6.3   Jheng Wei Li
• [gmx-users] error in running pdb2gmx   hasthi
  • [gmx-users] error in running pdb2gmx   Justin Lemkul
• [gmx-users] setting up simulation with mixed chain (nucleotide + amino acid)   Tomek Wlodarski
  • [gmx-users] setting up simulation with mixed chain (nucleotide + amino acid)   Justin Lemkul
• [gmx-users] (no subject)   Shima Arasteh
  • [gmx-users] position restraint term   Shima Arasteh
    • [gmx-users] position restraint term   Shima Arasteh
  • [gmx-users] (no subject)   Mark Abraham
• [gmx-users] nstlist and performances   Riccardo Concu
  • [gmx-users] nstlist and performances   Mark Abraham
    • [gmx-users] nstlist and performances   rajat desikan
      • [gmx-users] nstlist and performances   Mark Abraham
      • [gmx-users] nstlist and performances   rajat desikan
      • [gmx-users] nstlist and performances   Mark Abraham
• [gmx-users] RF0 and g_energy   Williams Ernesto Miranda Delgado
  • [gmx-users] RF0 and g_energy   Justin Lemkul
• [gmx-users] Membrane is shifted a lot during umbrella sampling   sudipta
• [gmx-users] Membrane is shifted a lot during umbrella sampling   sudipta
• [gmx-users] to study native cluster   Shine A
  • [gmx-users] to study native cluster   Tsjerk Wassenaar
• [gmx-users] problems with chain IDs for huge complex   Tomek Wlodarski
  • [gmx-users] problems with chain IDs for huge complex   jkrieger at mrc-lmb.cam.ac.uk
    • [gmx-users] problems with chain IDs for huge complex   Tomek Wlodarski
      • [gmx-users] problems with chain IDs for huge complex   Tsjerk Wassenaar
      • [gmx-users] problems with chain IDs for huge complex   jkrieger at mrc-lmb.cam.ac.uk
• [gmx-users] How to add motion of center of mass into temperature coupling?   李亚东
• [gmx-users] MD simulations in the presence of osmolytes   Amjad Farooq
  • [gmx-users] MD simulations in the presence of osmolytes   XAvier Periole
• [gmx-users] Cannot write trajectory frame; maybe you are out of disk space?   vsharma at imtech.res.in
• [gmx-users] ERROR when generated a rtp file with "grompp"   ookami a
  • [gmx-users] ERROR when generated a rtp file with "grompp"   Dallas Warren
    • [gmx-users] ERROR when generated a rtp file with "grompp"   ookami a
• [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 84   Raghunath Satpathy
• [gmx-users] Compiling GROMACS with fftw3   vansh
  • [gmx-users] Compiling GROMACS with fftw3   mcfc1301
  • [gmx-users] Compiling GROMACS with fftw3   mcfc1301
    • [gmx-users] Compiling GROMACS with fftw3   Justin Lemkul
      • [gmx-users] Compiling GROMACS with fftw3   mcfc1301
      • [gmx-users] Compiling GROMACS with fftw3   Justin Lemkul
      • [gmx-users] Compiling GROMACS with fftw3   Chandan Choudhury
    • [gmx-users] Compiling GROMACS with fftw3   Mark Abraham
• [gmx-users] ZN ion not in force field database   Prashant
  • [gmx-users] ZN ion not in force field database   Justin Lemkul
    • [gmx-users] ZN ion not in force field database   Prashant
• [gmx-users] gromacs 4.6.4 version - nvt equilibration error   vsharma at imtech.res.in
  • [gmx-users] gromacs 4.6.4 version - nvt equilibration error   MUSYOKA THOMMAS
    • [gmx-users] gromacs 4.6.4 version - nvt equilibration error   Justin Lemkul
      • [gmx-users] gromacs 4.6.4 version - nvt equilibration error   vansh
      • [gmx-users] gromacs 4.6.4 version - nvt equilibration error   Elton Carvalho
      • [gmx-users] gromacs 4.6.4 version - nvt equilibration error   vansh
      • [gmx-users] gromacs 4.6.4 version - nvt equilibration error   Mark Abraham
      • [gmx-users] gromacs 4.6.4 version - nvt equilibration error   vansh
      • [gmx-users] gromacs 4.6.4 version - nvt equilibration error   Mark Abraham
• [gmx-users] I can't re-image molecule for multiple MD without trjcat them from start   Asaminew Haile
  • [gmx-users] I can't re-image molecule for multiple MD without trjcat them from start   Justin Lemkul
• [gmx-users] (no subject)   fatemeh ramezani
  • [gmx-users] (no subject)   Mohsen Ramezanpour
    • [gmx-users] (no subject)   Justin Lemkul
  • [gmx-users] Avoiding domain decomposition error   Ricardo Oliveira dos Santos Soares
    • [gmx-users] Avoiding domain decomposition error   Carsten Kutzner
    • [gmx-users] Avoiding domain decomposition error   Mark Abraham
      • [gmx-users] Avoiding domain decomposition error   Ricardo Oliveira dos Santos Soares
• [gmx-users] pressure coupling   kiana moghaddam
  • [gmx-users] pressure coupling   Mohsen Ramezanpour
    • [gmx-users] pressure coupling   Mark Abraham
• [gmx-users] Umbrella sampling along collective coordinate   James Starlight
  • [gmx-users] Umbrella sampling along collective coordinate   James Starlight
• [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 86   Raghunath Satpathy
• [gmx-users] Expanding of the boundaries of the enssemble   James Starlight
  • [gmx-users] Expanding of the boundaries of the enssemble   Mark Abraham
    • [gmx-users] Expanding of the boundaries of the enssemble   James Starlight
      • [gmx-users] Expanding of the boundaries of the enssemble   Justin Lemkul
      • [gmx-users] Expanding of the boundaries of the enssemble   Mark Abraham
      • [gmx-users] Expanding of the boundaries of the enssemble   Bogdan Costescu
      • [gmx-users] Expanding of the boundaries of the enssemble   Mark Abraham
• [gmx-users] Solvation free energy calculation for proteins   bharat gupta
• [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 86   Mohsen Ramezanpour
• [gmx-users] free energy of hydration using GB   Neha Gandhi
• [gmx-users] a way to constraint molecules(make rigid CS2)   조주연
• [gmx-users] a way to constraint molecules(make rigid CS2)   JuYeon
  • [gmx-users] a way to constraint molecules(make rigid CS2)   Richard Broadbent
• [gmx-users] switching from Group to Verlet: broken atoms on the box border   andrea
• [gmx-users] viscosity of spc water model   Ahmet yıldırım
  • [gmx-users] viscosity of spc water model   Ahmet yıldırım
• [gmx-users] Help on the vector component   Ankita Naithani
  • [gmx-users] Fwd: Help on the vector component   Ankita Naithani
    • [gmx-users] Fwd: Help on the vector component   Tsjerk Wassenaar
      • [gmx-users] Fwd: Help on the vector component   Ankita Naithani
      • [gmx-users] Fwd: Help on the vector component   Tsjerk Wassenaar
      • [gmx-users] Fwd: Help on the vector component   Ankita Naithani
• [gmx-users] QM guy at wits' end   SAllen
  • [gmx-users] QM guy at wits' end   Justin Lemkul
    • [gmx-users] QM guy at wits' end   SAllen
  • [gmx-users] QM guy at wits' end   David van der Spoel
• [gmx-users] topology file for n-propanol   Ehsan Sadeghi
  • [gmx-users] topology file for n-propanol   Justin Lemkul
    • [gmx-users] topology file for n-propanol   Ehsan Sadeghi
      • [gmx-users] topology file for n-propanol   Justin Lemkul
• [gmx-users] How to create topology and coordinate files for different oils   Mass
  • [gmx-users] How to create topology and coordinate files for different oils   Justin Lemkul
• [gmx-users] can't find my protein pbd file in Protein data bank file   Mass
  • [gmx-users] can't find my protein pbd file in Protein data bank file   Dallas Warren
  • [gmx-users] can't find my protein pbd file in Protein data bank file   João Henriques
• [gmx-users] Dihedral PCA   bharat gupta
• [gmx-users] dihedral PCA   simula_460
• [gmx-users] Coulombic potential modifiers in Gromacs 4.6.4.   rajat desikan
  • [gmx-users] Coulombic potential modifiers in Gromacs 4.6.4.   Mark Abraham
    • [gmx-users] Coulombic potential modifiers in Gromacs 4.6.4.   rajat desikan
      • [gmx-users] Coulombic potential modifiers in Gromacs 4.6.4.   Mark Abraham
• [gmx-users] coarse-grained MD simulation   guozhicheng222
• [gmx-users] # of threads different than # of cores -> gmx hangs.   XAvier Periole
  • [gmx-users] # of threads different than # of cores -> gmx hangs.   Szilárd Páll
    • [gmx-users] # of threads different than # of cores -> gmx hangs.   XAvier Periole
      • [gmx-users] # of threads different than # of cores -> gmx hangs.   Mark Abraham
      • [gmx-users] # of threads different than # of cores -> gmx hangs.   XAvier Periole
      • [gmx-users] # of threads different than # of cores -> gmx hangs.   XAvier Periole
      • [gmx-users] # of threads different than # of cores -> gmx hangs.   Mark Abraham
      • [gmx-users] # of threads different than # of cores -> gmx hangs.   XAvier Periole
• [gmx-users] sufficient time for simulation   Ehsan Sadeghi
  • [gmx-users] sufficient time for simulation   Justin Lemkul
    • [gmx-users] sufficient time for simulation   Ehsan Sadeghi
      • [gmx-users] sufficient time for simulation   Justin Lemkul
• [gmx-users] Grompp error while using dual topology for free energy   bipin singh
  • [gmx-users] Grompp error while using dual topology for free energy   Justin Lemkul
    • [gmx-users] Grompp error while using dual topology for free energy   bipin singh
• [gmx-users] trjconv error   Rama
  • [gmx-users] trjconv error   Justin Lemkul
    • [gmx-users] trjconv error   Rama Krishna Koppisetti
      • [gmx-users] trjconv error   Justin Lemkul
      • [gmx-users] trjconv error   Rama Krishna Koppisetti
• [gmx-users] Dihedral PCA   bharat gupta
• [gmx-users] Principal Component Analysis   bharat gupta
• [gmx-users] P-LINCS   akn
  • [gmx-users] P-LINCS   Justin Lemkul
• [gmx-users] New empirical force field tools: Release of R.E.D. Server Dev./R.E.D. Python   FyD
• [gmx-users] Freezing problem   Debashis Sahu
  • [gmx-users] Freezing problem   Dr. Vitaly Chaban
    • [gmx-users] Freezing problem   Debashis Sahu
• [gmx-users] Extending Simulation   bharat gupta
  • [gmx-users] Extending Simulation   Chandan Choudhury
    • [gmx-users] Extending Simulation   Mark Abraham
      • [gmx-users] Extending Simulation   bharat gupta
• [gmx-users] cluster-PCA   Shine A
  • [gmx-users] cluster-PCA   Tsjerk Wassenaar
  • [gmx-users] cluster-PCA   lloyd riggs
• [gmx-users] Martini and Gromacs 3 and 4   Steve Seibold
  • [gmx-users] Martini and Gromacs 3 and 4   Justin Lemkul
    • [gmx-users] Martini and Gromacs 3 and 4   Tsjerk Wassenaar
      • [gmx-users] Martini and Gromacs 3 and 4   Steve
      • [gmx-users] Martini and Gromacs 3 and 4   Tsjerk Wassenaar
  • [gmx-users] Martini and Gromacs 3 and 4   XAvier Periole
• [gmx-users] MM-GB/SA analysis in Gromacs   Augusto Rocha
• [gmx-users] Coulomb Long range using PME   benrezkallah djamila
  • [gmx-users] Coulomb Long range using PME   Mark Abraham
• [gmx-users] Test particle insertion method   jinhong zhou
  • [gmx-users] Test particle insertion method   Rafael I. Silverman y de la Vega
• [gmx-users] the eigenvalue in the principle component analysis   xiao
  • [gmx-users] the eigenvalue in the principle component analysis   Tsjerk Wassenaar
• [gmx-users] Test particle insertion method   jinhong zhou
  • [gmx-users] Test particle insertion method   Rafael I. Silverman y de la Vega
• [gmx-users] How can I tell whether or not Gromacs was compiled with MPI?   Andrew DeYoung
  • [gmx-users] How can I tell whether or not Gromacs was compiled with MPI?   Mark Abraham
  • [gmx-users] How can I tell whether or not Gromacs was compiled with MPI?   lloyd riggs
• [gmx-users] gromacs-4.6.4 with GPU   aixintiankong
  • [gmx-users] gromacs-4.6.4 with GPU   Justin Lemkul
• [gmx-users] GPU g_energy problem   Andrei Neamtu
  • [gmx-users] GPU g_energy problem   Justin Lemkul
    • [gmx-users] GPU g_energy problem   Andrei Neamtu
• [gmx-users] Can't do GB electrostatics; the implicit_genborn_params section of the forcefield is missing parameters for 9 atomtypes or they might be negative.   sunita gupta
  • [gmx-users] Can't do GB electrostatics; the implicit_genborn_params section of the forcefield is missing parameters for 9 atomtypes or they might be negative.   Justin Lemkul
  • [gmx-users] Fwd: Can't do GB electrostatics; the implicit_genborn_params section of the forcefield is missing parameters for 9 atomtypes or they might be negative.   sunita gupta
• [gmx-users] gromacs-4.6.4 with GPU   aixintiankong
  • [gmx-users] gromacs-4.6.4 with GPU   Szilárd Páll
• [gmx-users] energy group tables   Chandan Choudhury
  • [gmx-users] energy group tables   Humberto Saint-Martin
    • [gmx-users] energy group tables   Chandan Choudhury
      • [gmx-users] energy group tables   Mark Abraham
      • [gmx-users] energy group tables   Humberto Saint-Martin
• [gmx-users] Normal Mode Analysis   Sathish Kumar
  • [gmx-users] Normal Mode Analysis   Tsjerk Wassenaar
    • [gmx-users] Normal Mode Analysis   Sathish Kumar
      • [gmx-users] Normal Mode Analysis   Tsjerk Wassenaar
  • [gmx-users] Normal Mode Analysis   lloyd riggs
    • [gmx-users] Normal Mode Analysis   Tsjerk Wassenaar
      • [gmx-users] Normal Mode Analysis   lloyd riggs
      • [gmx-users] Normal Mode Analysis   Sathish Kumar
      • [gmx-users] Normal Mode Analysis   lloyd riggs
• [gmx-users] Free energy of a surfactant with a counterion   Humberto Saint-Martin
  • [gmx-users] Free energy of a surfactant with a counterion   Humberto Saint-Martin
• [gmx-users] normal mode analysis   xiao
  • [gmx-users] normal mode analysis   Tsjerk Wassenaar
• [gmx-users] Dihedral PCA   bharat gupta
• [gmx-users] Questions about r_rdf in gromacs.4.6   Chuipeng Kong
• [gmx-users] (no subject)   Mahboobeh Eslami
  • [gmx-users] (no subject)   Mark Abraham
• [gmx-users] Invalid order for directive bondtypes   Elham Gholamrezai
  • [gmx-users] Invalid order for directive bondtypes   jkrieger at mrc-lmb.cam.ac.uk
• [gmx-users] (no subject)   Mahboobeh Eslami
  • [gmx-users] (no subject)   Justin Lemkul
• [gmx-users] the changing of velocity in production stage   Mahboobeh Eslami
  • [gmx-users] the changing of velocity in production stage   Mark Abraham
    • [gmx-users] the changing of velocity in production stage   Mahboobeh Eslami
      • [gmx-users] the changing of velocity in production stage   Mark Abraham
• [gmx-users] Invalid order for directive bondtypes   Elham Gholamrezai
  • [gmx-users] Invalid order for directive bondtypes   Mark Abraham
• [gmx-users] About g_potential   Guangwei Jiang
• [gmx-users] Regarding soft-core potential   bipin singh
  • [gmx-users] Regarding soft-core potential   Justin Lemkul
    • [gmx-users] Regarding soft-core potential   bipin singh
      • [gmx-users] Regarding soft-core potential   Justin Lemkul
      • [gmx-users] Regarding soft-core potential   bipin singh
• [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 117   sunita gupta
  • [gmx-users] gromacs.org_gmx-users Digest, Vol 115, Issue 117   Justin Lemkul
• [gmx-users] planned power outage   Mark Abraham
  • [gmx-users] planned power outage   Mark Abraham
    • [gmx-users] planned power outage   Mark Abraham
• [gmx-users] The 20 subsystems are not compatible (REMD)   Pacho Ramos
  • [gmx-users] The 20 subsystems are not compatible (REMD)   Mark Abraham
    • [gmx-users] The 20 subsystems are not compatible (REMD)   Pacho Ramos
• [gmx-users] About g_potential   Andrew DeYoung
• [gmx-users] Mailing list archive   Andrew DeYoung
  • [gmx-users] Mailing list archive   jkrieger at mrc-lmb.cam.ac.uk
    • [gmx-users] Mailing list archive   Justin Lemkul
• [gmx-users] Implicit solvent simulation of protein folding   Tobias Sikosek
  • [gmx-users] Implicit solvent simulation of protein folding   tsikosek
• [gmx-users] Mailing list archive   Andrew DeYoung
• [gmx-users] step 0Segmentation fault: 11   Valentina
  • [gmx-users] step 0Segmentation fault: 11   Valentina
    • [gmx-users] step 0Segmentation fault: 11   Justin Lemkul
      • [gmx-users] step 0Segmentation fault: 11   Valentina
      • [gmx-users] step 0Segmentation fault: 11   Mark Abraham
      • [gmx-users] step 0Segmentation fault: 11   Valentina
      • [gmx-users] step 0Segmentation fault: 11   Justin Lemkul
      • [gmx-users] step 0Segmentation fault: 11   Mark Abraham
• [gmx-users] AMBER ff10 with Gromacs   gromacs query
  • [gmx-users] AMBER ff10 with Gromacs   Szilárd Páll
    • [gmx-users] AMBER ff10 with Gromacs   Thomas Piggot
      • [gmx-users] AMBER ff10 with Gromacs   Szilárd Páll
      • [gmx-users] AMBER ff10 with Gromacs   gromacs query
• [gmx-users] flags for internal coordinates restraints   gromacs query
• [gmx-users] Warning while using g_bar   bipin singh
  • [gmx-users] Warning while using g_bar   Szilárd Páll
    • [gmx-users] Warning while using g_bar   bipin singh
• [gmx-users] gen_vel   Mahboobeh Eslami
  • [gmx-users] gen_vel   Justin Lemkul
• [gmx-users] RDF normalization   XUEMING TANG
• [gmx-users] calculate velocity autocorrelation function   Mahboobeh Eslami
  • [gmx-users] calculate velocity autocorrelation function   Justin Lemkul
    • [gmx-users] calculate velocity autocorrelation function   Mahboobeh Eslami
      • [gmx-users] calculate velocity autocorrelation function   Mark Abraham
      • [gmx-users] calculate velocity autocorrelation function   Mohsen Ramezanpour
      • [gmx-users] calculate velocity autocorrelation function   Mahboobeh Eslami
• [gmx-users] ACPYPE FAILED: 'MolTopol' object has no attribute 'chiralGroups'   Mahboobeh Eslami
  • [gmx-users] ACPYPE FAILED: 'MolTopol' object has no attribute 'chiralGroups'   Alan
    • [gmx-users] ACPYPE FAILED: 'MolTopol' object has no attribute 'chiralGroups'   Mahboobeh Eslami
• [gmx-users] Replica exchange problem on IBM BlueGene/Q   Ippoliti, Emiliano
  • [gmx-users] Replica exchange problem on IBM BlueGene/Q   Mark Abraham
• [gmx-users] Mailing list archive   Andrew DeYoung
• [gmx-users] topology for small peptide using amber03   kolnkempff
  • [gmx-users] topology for small peptide using amber03   Mark Abraham
• [gmx-users] Regarding soft core parameter: Relative solvation free energy calculation   bipin singh
  • [gmx-users] Regarding soft core parameter: Relative solvation free energy calculation   Michael Shirts
    • [gmx-users] Regarding soft core parameter: Relative solvation free energy calculation   bipin singh
      • [gmx-users] Regarding soft core parameter: Relative solvation free energy calculation   bipin singh
      • [gmx-users] Regarding soft core parameter: Relative solvation free energy calculation   Michael Shirts
      • [gmx-users] Regarding soft core parameter: Relative solvation free energy calculation   bipin singh
      • [gmx-users] Regarding soft core parameter: Relative solvation free energy calculation   Michael Shirts
      • [gmx-users] Regarding soft core parameter: Relative solvation free energy calculation   bipin singh
• [gmx-users] parallelization of processors on single system/node using MPI   Richa Singh
  • [gmx-users] parallelization of processors on single system/node using MPI   Szilárd Páll
• [gmx-users] step 0Segmentation fault: 11 (Mark Abraham)   ERASTOVA V.
• [gmx-users] free energy landscape   aixintiankong
  • [gmx-users] free energy landscape   Justin Lemkul
• [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Mahboobeh Eslami
  • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Timo Graen
    • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Mahboobeh Eslami
      • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Mohsen Ramezanpour
      • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Justin Lemkul
      • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Mohsen Ramezanpour
      • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Mohsen Ramezanpour
      • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Justin Lemkul
      • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Mohsen Ramezanpour
      • [gmx-users] AMBER99sb-ILDN force field and TIP4P water model   Timo Graen
• [gmx-users] REMD on GPU   James Starlight
  • [gmx-users] REMD on GPU   Mark Abraham
• [gmx-users] For GMX implicit solvent MD   dxli75 at hotmail.com
  • [gmx-users] For GMX implicit solvent MD   Justin Lemkul
    • [gmx-users] For GMX implicit solvent MD   dxli75 at hotmail.com
• [gmx-users] Gemcitabine topolgy for OPLS   Andres Ortega
• [gmx-users] mdrun_mpi_d   Mahboobeh Eslami
  • [gmx-users] mdrun_mpi_d   Chandan Choudhury
    • [gmx-users] mdrun_mpi_d   Mahboobeh Eslami
• [gmx-users] get a representative frame   aixintiankong
• [gmx-users] get a representative frame   aixintiankong
• [gmx-users] GMX_THREAD_MPI=ON" does not exis   Mahboobeh Eslami
  • [gmx-users] GMX_THREAD_MPI=ON" does not exis   Hardy, Adam
  • [gmx-users] GMX_THREAD_MPI=ON" does not exis   Mahboobeh Eslami
    • [gmx-users] GMX_THREAD_MPI=ON" does not exis   Chandan Choudhury
• [gmx-users] valid command line argument do i use by mdrun_mpi_d for 8 cores.   Mahboobeh Eslami
  • [gmx-users] valid command line argument do i use by mdrun_mpi_d for 8 cores.   Hardy, Adam
  • [gmx-users] valid command line argument do i use by mdrun_mpi_d for 8 cores.   Mark Abraham
    • [gmx-users] double precision and minimisation error   jkrieger at mrc-lmb.cam.ac.uk
      • [gmx-users] double precision and minimisation error   Justin Lemkul
• [gmx-users] pdb2gmx fails because of imaginary "Residue E"   kolnkempff
  • [gmx-users] pdb2gmx fails because of imaginary "Residue E"   Justin Lemkul
• [gmx-users] retrieve box size from .trr or .tpr   Saman Shahriyari
  • [gmx-users] retrieve box size from .trr or .tpr   Tsjerk Wassenaar
• [gmx-users] umbrella versus constraint in the pulling code   Dr. Vitaly Chaban
• [gmx-users] Umbrella Sampling tutorial   shahab shariati
  • [gmx-users] Umbrella Sampling tutorial   Justin Lemkul
• [gmx-users] Charge correction PME   Benrezkallah Djamila
  • [gmx-users] Charge correction PME   Dr. Vitaly Chaban
    • [gmx-users] Charge correction PME   Mark Abraham
      • [gmx-users] Charge correction PME   David van der Spoel
      • [gmx-users] Charge correction PME   lloyd riggs

Last message date: Sat Nov 30 21:59:23 CET 2013
Archived on: Sat Nov 30 21:59:23 CET 2013

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