[gmx-users] normal mode analysis

[Tsjerk Wassenaar]

Hi Fugui,

It uses whatever you put into it. You could try Martini. But should you
want to? It sounds like you should do a bit more background reading.

Cheers,

Tsjerk

On Nov 25, 2013 10:45 PM, "xiao" <helitrope at 126.com> wrote:

Dear gromacs users,


I am interested in normal mode analysis, but i have no idea about the time
needed for NMA compared with the regular MD.


My friend who uses NAMD, and he told me that the NMA took much time. The
reason  may be that he used all-atom force field, can anyone tell me
whether gromacs  also use all-atom force field to do the NMA?


Bset regards,


Fugui
--
Gromacs Users mailing list

* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send
a mail to gmx-users-request at gromacs.org.