[gmx-users] Illegal instruction flag raised in GMX 5.0.4

Harry Mark Greenblatt harry.greenblatt at weizmann.ac.il
Tue Dec 23 09:02:57 CET 2014


Gromacs is telling you that the -h option you supplied is not valid for this command.  You can see all the valid arguments for each
command here


Harry M. Greenblatt
Associate Staff Scientist
Dept of Structural Biology           harry.greenblatt at weizmann.ac.il
Weizmann Institute of Science        Phone:  972-8-934-3625
234 Herzl St.                        Facsimile:   972-8-934-4159
Rehovot, 76100

From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se [gromacs.org_gmx-users-bounces at maillist.sys.kth.se] on behalf of Jayant James [jayant.james at gmail.com]
Sent: Tuesday, December 23, 2014 9:42 AM
To: Discussion list for GROMACS users
Subject: [gmx-users] Illegal instruction flag raised in GMX 5.0.4

In the process of trying to simulate phosphorylated serines I installed
gromacs 5.0.4 because I was running into problems with pdb2gmx command not
able to merge files. After installation I ran a test command and got the
error below.  I am kinda lost as to what could be happening!!
I would appreciate any suggestions
Thank you
Jayant James


GROMACS:      gmx editconf, VERSION 5.0.4
Executable:   /share/apps/gromacs/5.0.4/bin/gmx
Library dir:  /share/apps/gromacs/5.0.4/share/gromacs/top
Command line:
  editconf -h

Illegal instruction

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