[gmx-users] Cardiolipin all-atom PDB and parameters (.itp)

[Justin Lemkul]

On 11/3/14 12:22 PM, shivangi nangia wrote:
> Hello gmx-users,
>
>
> I am looking for Cardiolipin's PDB and parameter (.itp) file.
> (Cardiolipin: an important component of the inner mitochondrial membrane)
>
> I looked through the user's list but could not find anything (some links
> have been specified which are now inactive)
>

Note that the archive still exists fully, and you can use the date within the 
URL to access the right page.

As to the cardiolipin issue, try CHARMM-GUI.  There are dozens of lipids 
available there as part of the membrane builder.  Otherwise, find a reliable 
paper that has done simulations and ask the corresponding author to share the 
topology.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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