November 2014 Archives by date

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Starting: Sat Nov 1 01:48:42 CET 2014
Ending: Sun Nov 30 22:08:32 CET 2014
Messages: 685

[gmx-users] Umbrella Sampling Tutorial Question Agnivo Gosai
[gmx-users] Umbrella Sampling Tutorial Question Justin Lemkul
[gmx-users] problems with testing a new gromacs installation (my first) for correctness infoseca
[gmx-users] problems with testing a new gromacs installation (my first) for correctness infoseca
[gmx-users] problems with testing a new gromacs installation (myfirst) for correctness infoseca
[gmx-users] Version 12 lloyd riggs
[gmx-users] Re : NPT Simulation average pressure lower than Reference set pressure Agnivo Gosai
[gmx-users] connecting two chains Somayeh Alimohammadi
[gmx-users] Re : NPT Simulation average pressure lower than Reference set pressure Justin Lemkul
[gmx-users] connecting two chains Justin Lemkul
[gmx-users] Energy minimization of an UNKNOWN molecule. Kalyanashis Jana
[gmx-users] Energy minimization of an UNKNOWN molecule. Victor Rosas Garcia
[gmx-users] Energy minimization of an UNKNOWN molecule. Kalyanashis Jana
[gmx-users] Re : NPT Simulation average pressure lower than Reference set pressure Tsjerk Wassenaar
[gmx-users] Energy minimization of an UNKNOWN molecule. Justin Lemkul
[gmx-users] problems with testing a new gromacs installation (my infoseca
[gmx-users] How to overcome the error "Atom P in residue DC 3 was not found in the rtp entry DC5 with 28 atoms while sorting atom." Seera Suryanarayana
[gmx-users] Simulating Multiple Solute Particles Nathan K Houtz
[gmx-users] Energy minimization of an UNKNOWN molecule. Kalyanashis Jana
[gmx-users] R: Tabulated potentials Francesco Mambretti
[gmx-users] Tabulated potentials Francesco Mambretti
[gmx-users] Cardiolipin all-atom PDB and parameters (.itp) shivangi nangia
[gmx-users] How to overcome the error "Atom P in residue DC 3 was not found in the rtp entry DC5 with 28 atoms while sorting atom." Justin Lemkul
[gmx-users] size of the box for peptide leila salimi
[gmx-users] Simulating Multiple Solute Particles Justin Lemkul
[gmx-users] Energy minimization of an UNKNOWN molecule. Justin Lemkul
[gmx-users] Cardiolipin all-atom PDB and parameters (.itp) Justin Lemkul
[gmx-users] Cardiolipin all-atom PDB and parameters (.itp) Tsjerk Wassenaar
[gmx-users] Query of RMSD results Sainitin Donakonda
[gmx-users] Postdoctoral Position at U.S. Army Research Laboratory in Coarse-Grain Modeling and Simulation Sergey Izvekov
[gmx-users] Query of RMSD results Justin Lemkul
[gmx-users] md.log interpretation Nizar Masbukhin
[gmx-users] Dr.Lemkul's Umbrella Sampling Tutorial - grompp note on leap frog/Nose-Hoover Agnivo Gosai
[gmx-users] Dr.Lemkul's Umbrella Sampling Tutorial - grompp note on leap frog/Nose-Hoover Justin Lemkul
[gmx-users] bennet acceptance ratio Michael Shirts
[gmx-users] Genbox question Kevin C Chan
[gmx-users] Simulating Multiple Solute Particles Nathan K Houtz
[gmx-users] bennet acceptance ratio Ahmet yıldırım
[gmx-users] hbond analysis Urszula Uciechowska
[gmx-users] Genbox question Justin Lemkul
[gmx-users] Simulating Multiple Solute Particles Justin Lemkul
[gmx-users] hbond analysis Justin Lemkul
[gmx-users] Frequency dependent dielectric constant Bharat Sharma
[gmx-users] Query of RMSD results Sainitin Donakonda
[gmx-users] Error asasa qsqs
[gmx-users] Question concerning G_SAXS order parameter in mixed bilayers Michal Skoczek
[gmx-users] pseudo-random algorithm Johnny Lu
[gmx-users] Pressure Question Johnny Lu
[gmx-users] size of the box for peptide Dr. Vitaly Chaban
[gmx-users] problems with testing a new gromacs installation (myfirst) for correctness Johnny Lu
[gmx-users] Dr.Lemkul's Umbrella Sampling Tutorial - grompp note on leap frog/Nose-Hoover Agnivo Gosai
[gmx-users] Error asasa qsqs
[gmx-users] Error Justin Lemkul
[gmx-users] Query of RMSD results Justin Lemkul
[gmx-users] GPU cards supported by Gromacs? Jian Yin
[gmx-users] GPU cards supported by Gromacs? Carsten Kutzner
[gmx-users] dangling bond error no matter what pdb file I use Thomas Lipscomb
[gmx-users] dangling bond error no matter what pdb file I use Justin Lemkul
[gmx-users] Position restraining protein during equilibration stage Agnivo Gosai
[gmx-users] Position restraining protein during equilibration stage Justin Lemkul
[gmx-users] GPU cards supported by Gromacs? Jian Yin
[gmx-users] bennet acceptance ratio Ahmet yıldırım
[gmx-users] Position restraining protein during equilibration stage Agnivo Gosai
[gmx-users] Making index file bharat gupta
[gmx-users] Making index file rajat desikan
[gmx-users] Making index file bharat gupta
[gmx-users] Making index file Eric Smoll
[gmx-users] Making index file bharat gupta
[gmx-users] Axis lloyd riggs
[gmx-users] Axis Eric Smoll
[gmx-users] Making index file rajat desikan
[gmx-users] GPU cards supported by Gromacs? Carsten Kutzner
[gmx-users] GPU cards supported by Gromacs? Albert
[gmx-users] Refcoord_scaling with Position Restraints on only a part of the protein Machtens, Jan-Philipp
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] Charmm to gromacs conversion for lipids João Martins
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Francesco Mambretti
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Machtens, Jan-Philipp
[gmx-users] problem in NPT equilibration soumadwip ghosh
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Francesco Mambretti
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Mark Abraham
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Francesco Mambretti
[gmx-users] Charmm to gromacs conversion for lipids Justin Lemkul
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Francesco Mambretti
[gmx-users] Charmm to gromacs conversion for lipids Justin Lemkul
[gmx-users] Position restraining protein during equilibration stage Justin Lemkul
[gmx-users] GPU cards supported by Gromacs? Justin Lemkul
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Tsjerk Wassenaar
[gmx-users] problem in NPT equilibration Justin Lemkul
[gmx-users] Charmm to gromacs conversion for lipids Justin Lemkul
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Tsjerk Wassenaar
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] Frequency dependent dielectric constant Bharat Sharma
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Francesco Mambretti
[gmx-users] Meaningless pressure values: NVT and NVE ensembles Mark Abraham
[gmx-users] md.log interpretation Mark Abraham
[gmx-users] Determining Force and torque of a group of atoms akari karin
[gmx-users] Determining Force and torque of a group of atoms akari karin
[gmx-users] problem in NPT equilibriation soumadwip ghosh
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] MD workstation for Gromacs Szilárd Páll
[gmx-users] GPU cards supported by Gromacs? Szilárd Páll
[gmx-users] GPU cards supported by Gromacs? Szilárd Páll
[gmx-users] speed of 5.0.2 v.s 4.6 Johnny Lu
[gmx-users] speed of 5.0.2 v.s 4.6 Mark Abraham
[gmx-users] speed of 5.0.2 v.s 4.6 Johnny Lu
[gmx-users] Pressure Question Mark Abraham
[gmx-users] Coordination vs cumulative number in g_rdf Venkat Reddy
[gmx-users] GPU cards supported by Gromacs? Jian Yin
[gmx-users] Fwd: Question about QM/MM calculations Mark Abraham
[gmx-users] Pressure Question Johnny Lu
[gmx-users] Pressure Question Johnny Lu
[gmx-users] question about pulling Tom
[gmx-users] Pressure Question Téletchéa Stéphane
[gmx-users] Pressure Question Johnny Lu
[gmx-users] problem in NPT equilibriation Justin Lemkul
[gmx-users] Charmm to gromacs conversion for lipids Justin Lemkul
[gmx-users] Updated CHARMM36 force field files available Justin Lemkul
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Kester Wong
[gmx-users] Pressure Question Antonio Baptista
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] (no subject) satya at physics.iisc.ernet.in
[gmx-users] modeling for rectangular cell Sakaguchi Daiki
[gmx-users] Replica Exchange with Solute Tempering 佐藤　千夏
[gmx-users] Version problem satya at physics.iisc.ernet.in
[gmx-users] Version problem Carsten Kutzner
[gmx-users] Version problem satya at physics.iisc.ernet.in
[gmx-users] Version problem Chandan Choudhury
[gmx-users] Pressure Question Téletchéa Stéphane
[gmx-users] Tested and most compatible Gromacs version for Mac OS Leopard (10.5) PAVAN PAYGHAN
[gmx-users] gmx covar (Version 5.x) segfaults with covariance matrices bigger than 1500x1500 Machtens, Jan-Philipp
[gmx-users] centering a protofibril in a box Adriana Garro
[gmx-users] Version problem Nizar Masbukhin
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Erik Marklund
[gmx-users] Pressure Question Johnny Lu
[gmx-users] md.log interpretation Nizar Masbukhin
[gmx-users] Version problem satya at physics.iisc.ernet.in
[gmx-users] Minimization is not running satya at physics.iisc.ernet.in
[gmx-users] Version problem Mark Abraham
[gmx-users] Version problem Erik Marklund
[gmx-users] Minimization is not running Mark Abraham
[gmx-users] gmx covar (Version 5.x) segfaults with covariance matrices bigger than 1500x1500 Mark Abraham
[gmx-users] Tested and most compatible Gromacs version for Mac OS Leopard (10.5) Mark Abraham
[gmx-users] Charmm to gromacs conversion for lipids Justin Lemkul
[gmx-users] centering a protofibril in a box Justin Lemkul
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] problem in NPT equilibration soumadwip ghosh
[gmx-users] Charmm to gromacs conversion for lipids Justin Lemkul
[gmx-users] problem in NPT equilibration Justin Lemkul
[gmx-users] Pressure Question Johnny Lu
[gmx-users] gmx covar (Version 5.x) segfaults with covariance matrices bigger than 1500x1500 Machtens, Jan-Philipp
[gmx-users] Pressure Question Mark Abraham
[gmx-users] Avg. Volume in NPT by Small Coupling Time Johnny Lu
[gmx-users] Pressure Question Mark Abraham
[gmx-users] Avg. Volume in NPT by Small Coupling Time Mark Abraham
[gmx-users] Pressure Question Johnny Lu
[gmx-users] centering a protofibril in a box Adriana Garro
[gmx-users] gmx covar (Version 5.x) segfaults with covariance matrices bigger than 1500x1500 Mark Abraham
[gmx-users] Avg. Volume in NPT by Small Coupling Time Johnny Lu
[gmx-users] Pressure Question Johnny Lu
[gmx-users] problem in NPT equilibration soumadwip ghosh
[gmx-users] help for strange linear force in Pulling Tom
[gmx-users] Frequency dependent dielectric constant Bharat Sharma
[gmx-users] Frequency dependent dielectric constant David van der Spoel
[gmx-users] How to exclude atoms within the same molecule from an rdf. Stella Nickerson
[gmx-users] Fwd: Re: Frequency dependent dielectric constant David van der Spoel
[gmx-users] How to exclude atoms within the same molecule from an rdf. João M. Damas
[gmx-users] Fwd: Re: Frequency dependent dielectric constant David van der Spoel
[gmx-users] Umbrella sampling ignore hydrogen command -ignh Chris Papamitrou
[gmx-users] Version problem Johnny Lu
[gmx-users] Version problem Johnny Lu
[gmx-users] centering a protofibril in a box Justin Lemkul
[gmx-users] Umbrella sampling ignore hydrogen command -ignh Justin Lemkul
[gmx-users] Pressure Question Antonio Baptista
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Kester Wong
[gmx-users] centering a protofibril in a box Tsjerk Wassenaar
[gmx-users] smd Yixin Ai
[gmx-users] Relation between bonds and nstlist Mario Fernández Pendás
[gmx-users] How rigid piston works in gromacs. Sushma Yadav
[gmx-users] Relation between bonds and nstlist Nizar Masbukhin
[gmx-users] Charmm to gromacs conversion for lipids Justin Lemkul
[gmx-users] Relation between bonds and nstlist Justin Lemkul
[gmx-users] Relation between bonds and nstlist Mario Fernández Pendás
[gmx-users] smd Victor Rosas Garcia
[gmx-users] smd Erik Marklund
[gmx-users] Charmm to gromacs conversion for lipids Venkat Reddy
[gmx-users] Discrepancy in a single point energy simulation between Gromacs and Namd. IÑIGO SAENZ
[gmx-users] Discrepancy in a single point energy simulation between Gromacs and Namd. Mark Abraham
[gmx-users] Dyn. Load Balance changes Cut off Johnny Lu
[gmx-users] Dyn. Load Balance changes Cut off Johnny Lu
[gmx-users] Dyn. Load Balance changes Cut off Mark Abraham
[gmx-users] Dyn. Load Balance changes Cut off Johnny Lu
[gmx-users] CMake Errors when installing gromacs-5.0.2 with Orca Matthew Kelley
[gmx-users] CMake Errors when installing gromacs-5.0.2 with Orca Mark Abraham
[gmx-users] CMake Errors when installing gromacs-5.0.2 with Orca Matthew Kelley
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Agnivo Gosai
[gmx-users] Relation between bonds and nstlist Justin Lemkul
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Justin Lemkul
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Johnny Lu
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Agnivo Gosai
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster suresh kannan
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Mohd Farid Ismail
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Mohd Farid Ismail
[gmx-users] Orienting a protein along an axis in GROMACS Thomas Lipscomb
[gmx-users] Orienting a protein along an axis in GROMACS Justin Lemkul
[gmx-users] nvt problem Lovika Moudgil
[gmx-users] Regarding simulated tempering Nizar Masbukhin
[gmx-users] dynamic cross-correlation maps and older gromacs binaries Rethi Madathil
[gmx-users] Relation between bonds and nstlist Mario Fernández Pendás
[gmx-users] dynamic cross-correlation maps and older gromacs binaries Mark Abraham
[gmx-users] dynamic cross-correlation maps and older gromacs binaries Mark Abraham
[gmx-users] nvt problem Mark Abraham
[gmx-users] Orienting a protein along an axis in GROMACS Thomas Lipscomb
[gmx-users] Orienting a protein along an axis in GROMACS Justin Lemkul
[gmx-users] Orienting a protein along an axis in GROMACS Justin Lemkul
[gmx-users] trjconv with or without water? Thomas Lipscomb
[gmx-users] trjconv with or without water? Justin Lemkul
[gmx-users] (no subject) Thomas Lipscomb
[gmx-users] (no subject) Justin Lemkul
[gmx-users] (no subject) Thomas Lipscomb
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Agnivo Gosai
[gmx-users] (no subject) Thomas Lipscomb
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Fwd: Running free energy tutorial for ionic molecules vivek sharma
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster suresh kannan
[gmx-users] Freezing groups and energy conservation Francesco Mambretti
[gmx-users] Error asasa qsqs
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Mark Abraham
[gmx-users] (no subject) Thomas Lipscomb
[gmx-users] (no subject) Thomas Lipscomb
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Agnivo Gosai
[gmx-users] Step-by-step example of protein-membrane MD start to finish Thomas Lipscomb
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Szilárd Páll
[gmx-users] Error Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Freezing groups and energy conservation Erik Marklund
[gmx-users] (no subject) Thomas Lipscomb
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Szilárd Páll
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Agnivo Gosai
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Agnivo Gosai
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Szilárd Páll
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Szilárd Páll
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Agnivo Gosai
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Szilárd Páll
[gmx-users] Installing GROMACS 4.6.7 on Intel Cluster Mark Abraham
[gmx-users] (no subject) Thomas Lipscomb
[gmx-users] (no subject) Justin Lemkul
[gmx-users] New problem GROMACS 4.6.7 in Intel Cluster Agnivo Gosai
[gmx-users] New problem GROMACS 4.6.7 in Intel Cluster Justin Lemkul
[gmx-users] New problem GROMACS 4.6.7 in Intel Cluster Mark Abraham
[gmx-users] Problem - How to center a protein in a CG simulation Carlos Navarro Retamal
[gmx-users] change in energy minimization md kashif
[gmx-users] crazy bonds in xtc file RINU KHATTRI
[gmx-users] change in energy minimization Indu Kumari
[gmx-users] energy minimization of protein taken from PDB md kashif
[gmx-users] Simulating Multiple Solute Particles Nathan K Houtz
[gmx-users] Freezing groups and energy conservation Francesco Mambretti
[gmx-users] SASA with rhombic dodecahedron rajat desikan
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Erik Marklund
[gmx-users] SASA with rhombic dodecahedron Tsjerk Wassenaar
[gmx-users] crazy bonds in xtc file Justin Lemkul
[gmx-users] change in energy minimization Justin Lemkul
[gmx-users] change in energy minimization Justin Lemkul
[gmx-users] energy minimization of protein taken from PDB Justin Lemkul
[gmx-users] Simulating Multiple Solute Particles Justin Lemkul
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Justin Lemkul
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Kester Wong
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Justin Lemkul
[gmx-users] SASA with rhombic dodecahedron rajat desikan
[gmx-users] SASA with rhombic dodecahedron rajat desikan
[gmx-users] Problem - How to center a protein in a CG simulation Carlos Navarro Retamal
[gmx-users] Problem - How to center a protein in a CG simulation Erik Marklund
[gmx-users] Problem - How to center a protein in a CG simulation Tsjerk Wassenaar
[gmx-users] Problem - How to center a protein in a CG simulation Carlos Navarro Retamal
[gmx-users] Problem - How to center a protein in a CG simulation Tsjerk Wassenaar
[gmx-users] Problem - How to center a protein in a CG simulation Carlos Navarro Retamal
[gmx-users] Problem - How to center a protein in a CG simulation Tsjerk Wassenaar
[gmx-users] Problem - How to center a protein in a CG simulation Carlos Navarro Retamal
[gmx-users] How to exclude atoms within the same molecule from an rdf. Stella Nickerson
[gmx-users] Problem - How to center a protein in a CG simulation Justin Lemkul
[gmx-users] Question about "Lysozyme in Water" tutorial by Dr. Lemkul Nima Soltani
[gmx-users] Question about "Lysozyme in Water" tutorial by Dr. Lemkul Justin Lemkul
[gmx-users] Problem - How to center a protein in a CG simulation Carlos Navarro Retamal
[gmx-users] How much different run (with posre.itp) from no posre.itp? Batdorj Batsaikhan
[gmx-users] Error while running free energy simulation. vivek sharma
[gmx-users] energy minimization of protein taken from PDB md kashif
[gmx-users] Ligand is not in the same position as in PDB file neha bharti
[gmx-users] Ligand is not in the same position as in PDB file Mark Abraham
[gmx-users] energy minimization of protein taken from PDB Mark Abraham
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Kester Wong
[gmx-users] Ligand is not in the same position as in PDB file neha bharti
[gmx-users] Ligand is not in the same position as in PDB file Mark Abraham
[gmx-users] Umbrella Sampling - Loop Motion Michael Carter
[gmx-users] lipid molecules are overlapping with protein molecule Padmani Sandhu
[gmx-users] How much different run (with posre.itp) from no posre.itp? Justin Lemkul
[gmx-users] Error while running free energy simulation. Justin Lemkul
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Justin Lemkul
[gmx-users] Umbrella Sampling - Loop Motion Justin Lemkul
[gmx-users] lipid molecules are overlapping with protein molecule Justin Lemkul
[gmx-users] GROMACS 5 - problem with LINCS with freeze groups Tomek Wlodarski
[gmx-users] Question about "Lysozyme in Water" tutorial by Dr. Lemkul Smith, Micholas D.
[gmx-users] GROMACS 5 - problem with LINCS with freeze groups Mark Abraham
[gmx-users] GROMACS 5 - problem with LINCS with freeze groups Tomek Wlodarski
[gmx-users] restarting of shifted potential, 4.6.7 bug? Johnny Lu
[gmx-users] restarting of shifted potential, 4.6.7 bug? Johnny Lu
[gmx-users] restarting of shifted potential, 4.6.7 bug? Johnny Lu
[gmx-users] Fwd: Re: Frequency dependent dielectric constant Bharat Sharma
[gmx-users] restarting of shifted potential, 4.6.7 bug? Mark Abraham
[gmx-users] restarting of shifted potential, 4.6.7 bug? Johnny Lu
[gmx-users] New problem GROMACS 4.6.7 in Intel Cluster Agnivo Gosai
[gmx-users] New problem GROMACS 4.6.7 in Intel Cluster Justin Lemkul
[gmx-users] lipid molecules are overlapping with proteinmolecule Padmani Sandhu
[gmx-users] Ligand interaction md kashif
[gmx-users] Ligand interaction rama david
[gmx-users] Simulating Multiple Solute Particles Nathan K Houtz
[gmx-users] Different fluctuation after concatenation neha bharti
[gmx-users] Ligand interaction md kashif
[gmx-users] simulation in implicit solvent for non standar residues Rebeca García Fandiño
[gmx-users] lipid molecules are overlapping with proteinmolecule Justin Lemkul
[gmx-users] Simulating Multiple Solute Particles Justin Lemkul
[gmx-users] Different fluctuation after concatenation Justin Lemkul
[gmx-users] Simulating Multiple Solute Particles Magnus Lundborg
[gmx-users] Ligand interaction Justin Lemkul
[gmx-users] Simulating Multiple Solute Particles Magnus Lundborg
[gmx-users] Flat-bottomed position restraint set liuyong_1007 at dicp.ac.cn
[gmx-users] Flat-bottomed position restraint set Justin Lemkul
[gmx-users] Hello Anik Sen
[gmx-users] Hello Justin Lemkul
[gmx-users] Apply secondary structure restraints only on part of the peptide while coarse graining shivangi nangia
[gmx-users] restarting of shifted potential, 4.6.7 bug? Johnny Lu
[gmx-users] selection of pulling region jinxin
[gmx-users] restarting of shifted potential, 4.6.7 bug? Johnny Lu
[gmx-users] Apply secondary structure restraints only on part of the peptide while coarse graining Tsjerk Wassenaar
[gmx-users] How to obtaine different protein orientations in a biphasic system James Lord
[gmx-users] Advice on the .mdp parameters for CG system with PW using PME shivangi nangia
[gmx-users] How to obtaine different protein orientations in a biphasic system Justin Lemkul
[gmx-users] Flat-bottomed position restraint set liuyong_1007 at dicp.ac.cn
[gmx-users] energy minimization md kashif
[gmx-users] Free Energy calculation RINU KHATTRI
[gmx-users] adding an acid as n-terminus Velia Minicozzi
[gmx-users] Doubt about g_energy. IÑIGO SAENZ
[gmx-users] adding an acid as n-terminus Mark Abraham
[gmx-users] Doubt about g_energy. Mark Abraham
[gmx-users] Doubt about g_energy. IÑIGO SAENZ
[gmx-users] contacts per residue in g_mindist serena leone
[gmx-users] adding an acid as n-terminus Justin Lemkul
[gmx-users] Free Energy calculation Justin Lemkul
[gmx-users] energy minimization Justin Lemkul
[gmx-users] contacts per residue in g_mindist Justin Lemkul
[gmx-users] Flat-bottomed position restraint set liuyong_1007 at dicp.ac.cn
[gmx-users] Flat-bottomed position restraint set Justin Lemkul
[gmx-users] lipid molecules are overlapping with proteinmolecule Padmani Sandhu
[gmx-users] energy minimization rama david
[gmx-users] Extra number of bonds created than specified (ZN-CYS) Nixon Raj
[gmx-users] Flat-bottomed position restraint set liuyong_1007 at dicp.ac.cn
[gmx-users] Extra number of bonds created than specified (ZN-CYS) Mark Abraham
[gmx-users] Extra number of bonds created than specified (ZN-CYS) Nixon Raj
[gmx-users] How to add a repulsive harmonic potential atsutoshi.okabe at takeda.com
[gmx-users] Extra number of bonds created than specified (ZN-CYS) Mark Abraham
[gmx-users] How to add a repulsive harmonic potential Mark Abraham
[gmx-users] Flat-bottomed position restraint set Erik Marklund
[gmx-users] IMPORTANT Anik Sen
[gmx-users] ramachandran plot Urszula Uciechowska
[gmx-users] IMPORTANT Mark Abraham
[gmx-users] What is cth stand for, in the parameters file. It is not written in the latest manual 4.5.6. Anik Sen
[gmx-users] energy minimization Onur TUNA
[gmx-users] What is cth stand for, in the parameters file. It is not written in the latest manual 4.5.6. Mark Abraham
[gmx-users] Equilibration from Non-shifted to Shifted Potential Johnny Lu
[gmx-users] Equilibration from Non-shifted to Shifted Potential Mark Abraham
[gmx-users] Equilibration from Non-shifted to Shifted Potential Johnny Lu
[gmx-users] ramachandran plot Tsjerk Wassenaar
[gmx-users] Equilibration from Non-shifted to Shifted Potential Mark Abraham
[gmx-users] ramachandran plot Urszula Uciechowska
[gmx-users] Equilibration from Non-shifted to Shifted Potential Johnny Lu
[gmx-users] Equilibration from Non-shifted to Shifted Potential Johnny Lu
[gmx-users] Calculating S^2 order parameters using iRED (Isotropic Reorientational Eigenmode Dynamics) Bailey A.
[gmx-users] trj_cavity segmentation fault Rohit Farmer
[gmx-users] (no subject) Alexander Law
[gmx-users] Dihedral parameter Hossein Lanjanian
[gmx-users] ramachandran plot Tsjerk Wassenaar
[gmx-users] Dihedral parameter Justin Lemkul
[gmx-users] Tryptophan Hbond Bug Alexander Law
[gmx-users] Flat-bottomed position restraint set liuyong_1007 at dicp.ac.cn
[gmx-users] Flat-bottomed position restraint set liuyong_1007 at dicp.ac.cn
[gmx-users] Understanding Force Plot in Umbrella Sampling Simulations Agnivo Gosai
[gmx-users] ffout Eric Smoll
[gmx-users] ffout David van der Spoel
[gmx-users] Protein comparison md kashif
[gmx-users] Building executable for template.c! Anjaiah Nalaparaju
[gmx-users] Protein comparison Onur Tuna
[gmx-users] Apply secondary structure restraints only on part of the peptide while coarse graining shivangi nangia
[gmx-users] Flat-bottomed position restraint set Oliver Stueker
[gmx-users] Umbrella Sampling and flat-bottom position restraints Oliver Stueker
[gmx-users] Tryptophan Hbond Bug Justin Lemkul
[gmx-users] Understanding Force Plot in Umbrella Sampling Simulations Justin Lemkul
[gmx-users] Protein comparison Justin Lemkul
[gmx-users] Umbrella Sampling and flat-bottom position restraints Justin Lemkul
[gmx-users] Building executable for template.c! Mark Abraham
[gmx-users] fitting problem Rohit Farmer
[gmx-users] fitting problem Mark Abraham
[gmx-users] Umbrella Sampling and flat-bottom position restraints Oliver Stueker
[gmx-users] problem with phosphorylated serine Jayant James
[gmx-users] Flat-bottomed position restraint set liuyong_1007 at dicp.ac.cn
[gmx-users] Building executable for template.c! Anjaiah Nalaparaju
[gmx-users] Protein comparison md kashif
[gmx-users] Updated CHARMM36 force field files available Guillaume Chevrot
[gmx-users] Protein comparison Alexander Law
[gmx-users] Protein comparison rama david
[gmx-users] adding ions in Gromacs 4.6.5 soumadwip ghosh
[gmx-users] getting illegal instruction error in gromacs 4.6.4 execution Chaitali Chandratre
[gmx-users] getting illegal instruction error in gromacs 4.6.4 execution Mark Abraham
[gmx-users] ramachandran plot Urszula Uciechowska
[gmx-users] ramachandran plot Tsjerk Wassenaar
[gmx-users] Protein comparison Onur Tuna
[gmx-users] Flat-bottomed position restraint set Oliver Stueker
[gmx-users] (no subject) behnaz abdolmaleki
[gmx-users] topolbuild (Fatal error. Source code file: readmol2.c, line: 162) leila karami
[gmx-users] topolbuild (Fatal error. Source code file: readmol2.c, line: 162) leila karami
[gmx-users] topolbuild (Fatal error. Source code file: readmol2.c, line: 162) leila karami
[gmx-users] Umbrella Sampling and flat-bottom position restraints Justin Lemkul
[gmx-users] problem with phosphorylated serine Justin Lemkul
[gmx-users] Updated CHARMM36 force field files available Justin Lemkul
[gmx-users] adding ions in Gromacs 4.6.5 Justin Lemkul
[gmx-users] Protein comparison Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] topolbuild (Fatal error. Source code file: readmol2.c, line: 162) Justin Lemkul
[gmx-users] topolbuild (Fatal error. Source code file: readmol2.c, line: 162) Bruce D. Ray
[gmx-users] problem with phosphorylated serine Jayant James
[gmx-users] problem with phosphorylated serine Justin Lemkul
[gmx-users] Updated CHARMM36 force field files available Guillaume Chevrot
[gmx-users] Updated CHARMM36 force field files available Justin Lemkul
[gmx-users] problem with phosphorylated serine Jayant James
[gmx-users] problem with phosphorylated serine Justin Lemkul
[gmx-users] Umbrella Sampling gromacs 5.0 error Alexander Law
[gmx-users] (no subject) soumadwip ghosh
[gmx-users] adding ions in Gromacs 4.6.5 soumadwip ghosh
[gmx-users] ramachandran plot Urszula Uciechowska
[gmx-users] Residue Selection Michael Carter
[gmx-users] Residue Selection Michael Carter
[gmx-users] Umbrella Sampling gromacs 5.0 error Justin Lemkul
[gmx-users] adding ions in Gromacs 4.6.5 Justin Lemkul
[gmx-users] Dihedral restraints Adriana Garro
[gmx-users] Tricky implementation of REST in GROMACS 4.6.5 Carlo Martinotti
[gmx-users] Changing constraints algorithm. Mario Fernández Pendás
[gmx-users] Wrong profile obtained in umbrella sampling tutorial Victor Rosas Garcia
[gmx-users] Changing constraints algorithm. Mark Abraham
[gmx-users] Changing constraints algorithm. Mario Fernández Pendás
[gmx-users] changing ewald_rtol Johnny Lu
[gmx-users] changing ewald_rtol Mark Abraham
[gmx-users] Wrong profile obtained in umbrella sampling tutorial Justin Lemkul
[gmx-users] Tricky implementation of REST in GROMACS 4.6.5 Justin Lemkul
[gmx-users] Dihedral restraints Justin Lemkul
[gmx-users] Wrong profile obtained in umbrella sampling tutorial Victor Rosas Garcia
[gmx-users] Wrong profile obtained in umbrella sampling tutorial Justin Lemkul
[gmx-users] help to solve this problem valiente
[gmx-users] Wrong profile obtained in umbrella sampling tutorial Victor Rosas Garcia
[gmx-users] restraint the CM of a molecules in any one of the directions. Sridhar Kumar Kannam
[gmx-users] g_hbond tool question Carlos Navarro Retamal
[gmx-users] changing ewald_rtol Johnny Lu
[gmx-users] Free Energy calculation RINU KHATTRI
[gmx-users] g_hbond tool question Erik Marklund
[gmx-users] Dihedral restraints Adriana Garro
[gmx-users] adding ions in Gromacs 4.6.5 soumadwip ghosh
[gmx-users] Replicating and equilibrating DPPC 128 lipid. pdb Priya Das
[gmx-users] Tricky implementation of REST in GROMACS 4.6.5 Carlo Martinotti
[gmx-users] System drift with velocity verlet integrator Kristoffer Enøe Johansson
[gmx-users] Replicating and equilibrating DPPC 128 lipid. pdb Catarina A. Carvalheda dos Santos
[gmx-users] Replicating and equilibrating DPPC 128 lipid. pdb Priya Das
[gmx-users] Replicating and equilibrating DPPC 128 lipid. pdb Catarina A. Carvalheda dos Santos
[gmx-users] Replicating and equilibrating DPPC 128 lipid. pdb Justin Lemkul
[gmx-users] Replicating and equilibrating DPPC 128 lipid. pdb Priya Das
[gmx-users] Replicating and equilibrating DPPC 128 lipid. pdb Priya Das
[gmx-users] Tricky implementation of REST in GROMACS 4.6.5 Mark Abraham
[gmx-users] Replicating and equilibrating DPPC 128 lipid. pdb Justin Lemkul
[gmx-users] adding ions in Gromacs 4.6.5 Justin Lemkul
[gmx-users] Free Energy calculation Justin Lemkul
[gmx-users] g_hbond tool question Carlos Navarro Retamal
[gmx-users] Error while running free energy simulation. vivek sharma
[gmx-users] Changing constraints algorithm. Mark Abraham
[gmx-users] Tricky implementation of REST in GROMACS 4.6.5 Szilárd Páll
[gmx-users] Tricky implementation of REST in GROMACS 4.6.5 Szilárd Páll
[gmx-users] Changing constraints algorithm. Mario Fernández Pendás
[gmx-users] Error while running free energy simulation. Mark Abraham
[gmx-users] constant pH molecular dynamic simulation Lan Jin
[gmx-users] Relation between bonds and nstlist Mario Fernández Pendás
[gmx-users] Relation between bonds and nstlist Mark Abraham
[gmx-users] constant pH molecular dynamic simulation Mark Abraham
[gmx-users] Analysis program g_wham Kevin C Chan
[gmx-users] problem in energy minimization of protein in POPC lipid membrane Padmani Sandhu
[gmx-users] problem in energy minimization of protein in lipid membrane Padmani Sandhu
[gmx-users] help to solve this problem valiente
[gmx-users] Analysis program g_wham Justin Lemkul
[gmx-users] problem in energy minimization of protein in POPC lipid membrane Justin Lemkul
[gmx-users] help to solve this problem Justin Lemkul
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Soren Wacker
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Carsten Kutzner
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Johnny Lu
[gmx-users] help to solve this problem valiente
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Soren Wacker
[gmx-users] Problems with Ion Fábio Filippi Matioli
[gmx-users] Problems with Ion Fábio Filippi Matioli
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Mark Abraham
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Soren Wacker
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Mark Abraham
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Soren Wacker
[gmx-users] How to use make_ndx in script to combine 2 groups Agnivo Gosai
[gmx-users] Installing gromacs 5.0.2 single precision with CUDA and MPI ?? Soren Wacker
[gmx-users] Installing gromacs 5.0.2 single precision with CUDA and MPI ?? Mark Abraham
[gmx-users] How to use make_ndx in script to combine 2 groups Jia Xu
[gmx-users] problem in energy minimization of protein in POPC lipid membrane Padmani Sandhu
[gmx-users] Installing gromacs 5.0.2 single precision with CUDA and MPI ?? Soren Wacker
[gmx-users] problem in energy minimization of protein in lipid membrane Justin Lemkul
[gmx-users] help to solve this problem Justin Lemkul
[gmx-users] Problems with Ion Justin Lemkul
[gmx-users] Installing gromacs 5.0.2 single precision with CUDA and MPI ?? Justin Lemkul
[gmx-users] Problem mdrun_mpi GROMACS 4.6.1 in Intel Cluster Agnivo Gosai
[gmx-users] Problem mdrun_mpi GROMACS 4.6.1 in Intel Cluster Mark Abraham
[gmx-users] Problem mdrun_mpi GROMACS 4.6.1 in Intel Cluster Mark Abraham
[gmx-users] Force field parameter for Fe, Mo, Mn, Cd, Ni and Co. majid foroughi
[gmx-users] addition of the .itp file of a new residue soumadwip ghosh
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Carsten Kutzner
[gmx-users] DPPC replication error Priya Das
[gmx-users] DPPC replication error Priya Das
[gmx-users] problem in energy minimization of protein in lipidmembrane Padmani Sandhu
[gmx-users] Installing gromacs 5.0.2 double precision with shared fftw libraries Mark Abraham
[gmx-users] DPPC replication error Priya Das
[gmx-users] Force field parameter for Fe, Mo, Mn, Cd, Ni and Co. Justin Lemkul
[gmx-users] addition of the .itp file of a new residue Justin Lemkul
[gmx-users] DPPC replication error Justin Lemkul
[gmx-users] DPPC replication error Priya Das
[gmx-users] Problems with Ion Fábio Filippi Matioli
[gmx-users] Problems with Ion Fábio Filippi Matioli
[gmx-users] Installing gromacs 5.0.2 single precision with CUDA and MPI ?? Soren Wacker
[gmx-users] DPPC replication error Justin Lemkul
[gmx-users] Problems with Ion Justin Lemkul
[gmx-users] addition of the .itp file of a new residue soumadwip ghosh
[gmx-users] dump current rlist in cpt Johnny Lu
[gmx-users] regarding do_dssp RINU KHATTRI
[gmx-users] regarding do_dssp RINU KHATTRI
[gmx-users] Umbrella Sampling gromacs 5.0 error Alexander Law
[gmx-users] Gamess-us Hossein Lanjanian
[gmx-users] DPPC replication error Priya Das
[gmx-users] dump current rlist in cpt Mark Abraham
[gmx-users] Installing gromacs 5.0.2 single precision with CUDA and MPI ?? Mark Abraham
[gmx-users] dihedral angle g_angle? Urszula Uciechowska
[gmx-users] implicit membrane in gromacs 4.6 or 5 atsutoshi.okabe at takeda.com
[gmx-users] Umbrella Sampling gromacs 5.0 error Justin Lemkul
[gmx-users] Umbrella Sampling gromacs 5.0 error Justin Lemkul
[gmx-users] addition of the .itp file of a new residue Justin Lemkul
[gmx-users] regarding do_dssp Justin Lemkul
[gmx-users] DPPC replication error Justin Lemkul
[gmx-users] dihedral angle g_angle? Justin Lemkul
[gmx-users] implicit membrane in gromacs 4.6 or 5 Justin Lemkul
[gmx-users] Installing gromacs 5.0.2 single precision with CUDA and MPI ?? Soren Wacker
[gmx-users] Modify TIP4P to TIP4P-Ew Cai
[gmx-users] Modify TIP4P to TIP4P-Ew Justin Lemkul
[gmx-users] Modify TIP4P to TIP4P-Ew Cai
[gmx-users] Modify TIP4P to TIP4P-Ew Justin Lemkul
[gmx-users] xthompson p David de Sancho
[gmx-users] gromacs QMMM gaussian 09 (g09) input format Stanislav Šimko
[gmx-users] s-s bond recognition Hamid Mahdiuni
[gmx-users] s-s bond recognition Abhi Acharya
[gmx-users] s-s bond recognition mahdiuni
[gmx-users] s-s bond recognition Justin Lemkul
[gmx-users] Umbrella Sampling gromacs 5.0 error Alexander Law
[gmx-users] Umbrella Sampling gromacs 5.0 error Justin Lemkul
[gmx-users] Umbrella Sampling gromacs 5.0 error Alexander Law
[gmx-users] mdrun_command_not working in cygwin Shahid Nayeem
[gmx-users] remove cemter of mass motion in particular direction Mikhail Stukan
[gmx-users] POPC with CHARMM h.alizadeh at znu.ac.ir
[gmx-users] mdrun_command_not working in cygwin Mirco Wahab
[gmx-users] Umbrella Sampling gromacs 5.0 error Justin Lemkul
[gmx-users] remove cemter of mass motion in particular direction Justin Lemkul
[gmx-users] POPC with CHARMM Justin Lemkul
[gmx-users] mdrun_command_not working in cygwin Shahid Nayeem
[gmx-users] mdrun_command_not working in cygwin Mirco Wahab
[gmx-users] REMD and MARTINI force field Nicolas Floquet
[gmx-users] REMD and MARTINI force field Michael Shirts
[gmx-users] Atom-barycenter distance Marcelo Depólo
[gmx-users] A box of amino acids Kevin C Chan
[gmx-users] A box of amino acids Mark Abraham
[gmx-users] Electrostatic force cutoffs Nathan K Houtz
[gmx-users] Umbrella Sampling Results and Issues Agnivo Gosai
[gmx-users] Umbrella Sampling Results and Issues HANNIBAL LECTER
[gmx-users] restraint the CM of a molecules in any one of the directions. Sridhar Kumar Kannam
[gmx-users] restraint the CM of a molecules in any one of the directions. Justin Lemkul
[gmx-users] ex g_sas and hydrophobicity Jernej Zidar
[gmx-users] regarding g_rdf soumadwip ghosh
[gmx-users] DPPC replication error Priya Das
[gmx-users] Regarding umbrella samplling Sathish Kumar
[gmx-users] Reference group in COM pulling WT Ren
[gmx-users] regarding frames in gromacs RINU KHATTRI
[gmx-users] regarding frames in gromacs Mark Abraham
[gmx-users] regarding frames in gromacs RINU KHATTRI
[gmx-users] g_angle periodic ayşe K
[gmx-users] g_angle periodic Tsjerk Wassenaar
[gmx-users] regarding frames in gromacs Mark Abraham
[gmx-users] ex g_sas and hydrophobicity Justin Lemkul
[gmx-users] DPPC replication error Justin Lemkul
[gmx-users] Regarding umbrella samplling Justin Lemkul
[gmx-users] Reference group in COM pulling Justin Lemkul
[gmx-users] Reference group in COM pulling WT Ren
[gmx-users] Reference group in COM pulling Erik Marklund
[gmx-users] Reference group in COM pulling WT Ren
[gmx-users] g_angle ayşe K
[gmx-users] g_angle Mark Abraham
[gmx-users] Minimal box vectors chosen by the pressure integration Mirco Wahab
[gmx-users] regarding g_rdf soumadwip ghosh
[gmx-users] Umbrella Sampling and Electric Field Agnivo Gosai
[gmx-users] Minimal box vectors chosen by the pressure integration Mirco Wahab
[gmx-users] Minimal box vectors chosen by the pressure integration Mark Abraham
[gmx-users] SMD - Pulling Error in mdrun 0.49 times box size Agnivo Gosai
[gmx-users] SMD - Pulling Error in mdrun 0.49 times box size Alexander Law
[gmx-users] SMD - Pulling Error in mdrun 0.49 times box size Agnivo Gosai
[gmx-users] Value output by g_energy Jackson Chief Elk
[gmx-users] Value output by g_energy Mark Abraham
[gmx-users] read trr file 石锐
[gmx-users] regarding g_rdf Justin Lemkul
[gmx-users] SMD - Pulling Error in mdrun 0.49 times box size Justin Lemkul
[gmx-users] read trr file Justin Lemkul
[gmx-users] regarding frames in gromacs RINU KHATTRI
[gmx-users] read trr file RINU KHATTRI
[gmx-users] read trr file Tsjerk Wassenaar
[gmx-users] Value output by g_energy Jackson Chief Elk
[gmx-users] regarding frames in gromacs Mark Abraham
[gmx-users] restraint the CM of a molecules in any one of the directions. Sridhar Kumar Kannam
[gmx-users] Option to run mdrun without GPUs Hardy, Adam
[gmx-users] Option to run mdrun without GPUs Mark Abraham
[gmx-users] Option to run mdrun without GPUs Szilárd Páll
[gmx-users] read trr file Patrick Fuchs
[gmx-users] read trr file Jakub Krajniak
[gmx-users] read trr file Tsjerk Wassenaar
[gmx-users] read trr file Patrick Fuchs
[gmx-users] g_angle ayşe K
[gmx-users] DREIDING and COMPASS force fields in Gromacs andrew biedermann
[gmx-users] read trr file 石锐
[gmx-users] The mdrun can not continue to run from the last check point liuyong_1007 at dicp.ac.cn
[gmx-users] DPPC replication error Priya Das
[gmx-users] DPPC replication error Priya Das
[gmx-users] Very large Max Force [Energy minimisation] in water with ions Kester Wong
[gmx-users] The mdrun can not continue to run from the last check point Mark Abraham
[gmx-users] classical heavy water model xy21hb
[gmx-users] classical heavy water model Erik Marklund
[gmx-users] questions abot normal mode analysis in gromacs 凌未风
[gmx-users] restraint the CM of a molecules in any one of the directions. Justin Lemkul
[gmx-users] Question about GPU acceleration chip
[gmx-users] number of clusters over time Steven Neumann
[gmx-users] number of clusters over time David van der Spoel
[gmx-users] Question about GPU acceleration Jernej Zidar
[gmx-users] Error in genrestr Priya Das
[gmx-users] Error in genrestr RINU KHATTRI
[gmx-users] Error in genrestr Mark Abraham
[gmx-users] Error in genrestr RINU KHATTRI
[gmx-users] Question about GPU acceleration Mark Abraham
[gmx-users] Dihedral angle calculation in Gromacs Ankit Agrawal
[gmx-users] Error in genrestr Priya Das
[gmx-users] Regarding atom selection while using g_rdf soumadwip ghosh
[gmx-users] number of clusters over time Piggot T.
[gmx-users] g_angle between three atoms Cyrus Djahedi
[gmx-users] g_angle between three atoms Victor Rosas Garcia
[gmx-users] segmentation fault during energy minimization soumadwip ghosh
[gmx-users] The mdrun can not continue to run from the last check point Smith, Micholas D.
[gmx-users] g_angle between three atoms Justin Lemkul
[gmx-users] segmentation fault during energy minimization Justin Lemkul
[gmx-users] g_correlation: "Software inconsistency error" Gromacs 3.3.0 Ryan Choi
[gmx-users] g_correlation: "Software inconsistency error" Gromacs 3.3.0 David van der Spoel
[gmx-users] (no subject) Hooman Vahidi
[gmx-users] (no subject) Hooman Vahidi
[gmx-users] paralleling Gromacs and using GPU Hooman Vahidi
[gmx-users] mdrun in gromacs 5.0.2 marzieh dehghan
[gmx-users] mdrun in gromacs 5.0.2 Justin Lemkul
[gmx-users] interaction between ligand and protein Mahboobeh Eslami
[gmx-users] interaction between ligand and protein Onur Tuna
[gmx-users] interaction between ligand and protein Justin Lemkul
[gmx-users] interaction between ligand and protein Mahboobeh Eslami
[gmx-users] interaction between ligand and protein Mahboobeh Eslami
[gmx-users] Electrostatic force cutoffs Nathan K Houtz
[gmx-users] Electrostatic force cutoffs Mark Abraham
[gmx-users] Position Restraint or remove COM from DNA Hovakim Grabski
[gmx-users] Position Restraint or remove COM from DNA Justin Lemkul

Last message date: Sun Nov 30 22:08:32 CET 2014
Archived on: Sun Nov 30 22:08:32 CET 2014

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