[gmx-users] hbond analysis

[Urszula Uciechowska]

Dear Gromacs users,

Regarding the g_hbond analysis.
What does exactly represent the second and third column in hbond.xvg file
(pasted below)?


 g_hbond is part of G R O M A C S:
#
# Gromacs Runs One Microsecond At Cannonball Speeds
#
@    title "Hydrogen Bonds"
@    xaxis  label "Time"
@    yaxis  label "Number"
@TYPE xy
@ view 0.15, 0.15, 0.75, 0.85
@ legend on
@ legend box on
@ legend loctype view
@ legend 0.78, 0.8
@ legend length 2
@ s0 legend "Hydrogen bonds"
@ s1 legend "Pairs within 0.35 nm"
         0           0           0
         1           0           0
         2           0           0
         3           0           0
         4           0           0
         5           0           0
         6           0           0
         7           0           0
         8           0           0
         9           0           0
        10           0           0
        11           0           0
        12           0           0
        13           0           0
        14           0           0
        15           0           0
        16           0           0
:

Best regrads
Urszula


University of Gdansk and Medical Univesity of Gdansk
Department of Molecular and Cellular Biology
ul. Kladki 24
80-822 Gdansk
Poland


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http://www.ug.edu.pl/