[gmx-users] (no subject)

[Thomas Lipscomb]

Dear gmx-users,

I am still following this tutorial:
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html


But I got an error at this step:
"Note how many lipids were deleted and update the [ molecules ] directive of your topology accordingly. Run energy minimization. Then, scale down the lipids by a factor of 0.95 (assuming you have used default names, the result of the minimization is called "confout.gro"):
perl inflategro.pl confout.gro 0.95 DPPC 0 system_shrink1.gro 5 area_shrink1.dat"


[tlipscomb at prime-radiant KALP]$ perl inflategro.pl confout.gro 0.95 DPPC 0 system_shrink1.gro 5 area_shrink1.dat
Eeeeek! No confout.gro at all!

Died at inflategro.pl line 81.
[tlipscomb at prime-radiant KALP]$ 

Sincerely,
Thomas