[gmx-users] change in energy minimization
jalemkul at vt.edu
Mon Nov 10 13:36:48 CET 2014
On 11/10/14 12:16 AM, md kashif wrote:
> Dear all
> I am new user and stuck with the energy minimization conflict.
> I am following the gromacs tutorial (
> in water) for my protein and getting the energy minimized protein with
> Epot= -1.5248922e+06 is this value correct? I have used mdp files same as
> given in the sample tutorial.
There is no way to know what the "correct" value is for any given system. If
the potential is negative and Fmax has converged below emtol, then minimization
did its job.
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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