[gmx-users] lipid molecules are overlapping with protein molecule

[Padmani Sandhu]

Hello all,


I am trying to energy minimize a trimeric protein in DPPC bilayer but
facing problem in reaching desired lipid per area using "inflategro.pl".
After 5 or 6 steps of shrinking and energy minimization lipids molecules
start interfering with protein. I tried to increase cutt-off, but that is
also giving error during grompp.


Thanks



Padmani,






-- 
*Padmani sandhu*
*Research Scholar,*
*Center for Computational Biology and Bioinformatics,*
*Central University of Himachal Pradesh,*
*Temporary Academic Block, Shahpur *
*Pin 176206, District Kangra,*
*Himachal Pradesh, India*