[gmx-users] lipid molecules are overlapping with protein molecule
padmanisandhu09 at gmail.com
Tue Nov 11 12:45:19 CET 2014
I am trying to energy minimize a trimeric protein in DPPC bilayer but
facing problem in reaching desired lipid per area using "inflategro.pl".
After 5 or 6 steps of shrinking and energy minimization lipids molecules
start interfering with protein. I tried to increase cutt-off, but that is
also giving error during grompp.
*Center for Computational Biology and Bioinformatics,*
*Central University of Himachal Pradesh,*
*Temporary Academic Block, Shahpur *
*Pin 176206, District Kangra,*
*Himachal Pradesh, India*
More information about the gromacs.org_gmx-users