[gmx-users] How much different run (with posre.itp) from no posre.itp?
jalemkul at vt.edu
Tue Nov 11 13:29:51 CET 2014
On 11/11/14 12:30 AM, Batdorj Batsaikhan wrote:
> Dear gmx-users,
> I run 3 different conformation of a protein. I run 2 of them no posre.itp and another one has posre.itp. How much different these two run?
Impossible to tell. You've got too many variables - different conformations,
different application of restraints, as well as (presumably) different random
velocities at the outset of each run. Even if you could control for different
factors, I don't know what you'd hope to learn by comparing such simulations.
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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