[gmx-users] ramachandran plot

[Urszula Uciechowska]

Could you please send me the code? It can be on my private email.

Thanks a lot

Ursuzla

> Hi Urszula,
>
> It's a while ago that I made that one, and I don't have the code at hand.
> But it's a combination of a density plot (kde2d) with the points laid
> over,
> and a polygon to highlight the forbidden region. These days I'm doing
> circular 2D KDEs, whic is more correct. I can send the R code for thay if
> you want.
>
> Best,
>
> Tsjerk
> On Nov 14, 2014 12:34 PM, "Urszula Uciechowska" <
> urszula.uciechowska at biotech.ug.edu.pl> wrote:
>
>> Dear Gromacs users,
>>
>> I generated the ramachandran plot and would like to colour it in xmgrace
>> as it was shown in tutorial:
>>  http://nmr.chem.uu.nl/~adrien/course/molmod/analysis2.html
>>
>> Does anyone know how to do it?
>>
>> Best regards
>> Urszula Uciechowska
>>
>>
>>
>>
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University of Gdansk and Medical Univesity of Gdansk
Department of Molecular and Cellular Biology
ul. Kladki 24
80-822 Gdansk
Poland


-----------------------------------------
Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego
http://www.ug.edu.pl/