[gmx-users] Protein comparison

[Onur Tuna]

Dear kashifzamir,

What will you compare? As I guess, if you want to compare the protein structure before and after docking, you have to use VMD.

Best
Onur

> On 16 Nov 2014, at 11:43, md kashif <kashifzamir180.mk at gmail.com> wrote:
> 
> Dear all
> I have protein pdb file and protein+ligand pdb file generated after
> docking. How can I compare them by using gromacs?
> 
> Thanks
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