[gmx-users] problem in energy minimization of protein in lipid membrane
jalemkul at vt.edu
Thu Nov 20 02:04:48 CET 2014
On 11/19/14 12:32 PM, Padmani Sandhu wrote:
> Helllo all,
> I am facing problem with energy minimization of system after reaching
> desired area per lipid. System is not converging to Fmax < 1000 during
> final energy minimization. I have turned off all strong position restraints
> for protein.
What are the actual values of Fmax and Epot from mdrun? Note that it also
prints out the atom bearing Fmax, so that is your first indication of where
problems may be. Visualize the output and see what you can learn.
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
More information about the gromacs.org_gmx-users