[gmx-users] Invalid order for directive bondtypes

Atila Petrosian atila.petrosian at gmail.com
Mon Oct 6 15:56:56 CEST 2014

Dear Mark

Very thanks for you reply.

I solved previous problem by swapping the order of my #include statements
in forcefield.itp file.

I used grompp for energy minimization, I obtained em.tpr file without any
problem. Then I used mdrun for energy minimization, this step was done
without error, but, when I see gro file obtained from minimization using
VMD, there is unusual state. Those figures related to this state are in
following links:



What is the reason of this state?

How to solve this problem?

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