October 2014 Archives by date

Messages sorted by: [ thread ] [ subject ] [ author ]
More info on this list...

Starting: Wed Oct 1 04:08:56 CEST 2014
Ending: Fri Oct 31 21:38:06 CET 2014
Messages: 734

[gmx-users] Folding simulation using gromacs AINUN NIZAR M
[gmx-users] Suggestion on Simple protocol for MD.. rama david
[gmx-users] Folding simulation using gromacs Mirco Wahab
[gmx-users] performance 1 gpu Johnny Lu
[gmx-users] performance 1 gpu Mark Abraham
[gmx-users] Gromacs 5.0.2 released Mark Abraham
[gmx-users] Performance of GTX 980 and 970 Pappu Kumar
[gmx-users] Performance of GTX 980 and 970 Szilárd Páll
[gmx-users] RB dihedral performance greatly improved! [was: Re: GPU waits for CPU, any remedies?] Szilárd Páll
[gmx-users] source cord routines for electric fields 米谷慎
[gmx-users] source cord routines for electric fields David van der Spoel
[gmx-users] source cord routines for electric fields Makoto Yoneya
[gmx-users] User tabulated potentials with cutoff-scheme = verlet, GROMACS 5.0.1 and 5.0.2 Francesco Mambretti
[gmx-users] User tabulated potentials with cutoff-scheme = verlet, GROMACS 5.0.1 and 5.0.2 Mirco Wahab
[gmx-users] User tabulated potentials with cutoff-scheme = verlet, GROMACS 5.0.1 and 5.0.2 Mark Abraham
[gmx-users] g_tune_pme_mpi is not compatible to mdrun_mpi Mark Abraham
[gmx-users] R: Re: User tabulated potentials with cutoff-scheme = verlet, GROMACS 5.0.1 and 5.0.2 Francesco Mambretti
[gmx-users] R: Re: User tabulated potentials with cutoff-scheme = verlet, GROMACS 5.0.1 and 5.0.2 Mark Abraham
[gmx-users] Running jobs between different Gromacs versions Mustafa TEKPINAR
[gmx-users] Running jobs between different Gromacs versions David van der Spoel
[gmx-users] Force field for phosphoserine ashish bihani
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Anurag Dobhal
[gmx-users] parachem GMX xy21hb
[gmx-users] R: Re: R: Re: User tabulated potentials with cutoff-scheme = verlet, GROMACS 5.0.1 and 5.0.2 Francesco Mambretti
[gmx-users] R: Re: R: Re: User tabulated potentials with cutoff-scheme = verlet, GROMACS 5.0.1 and 5.0.2 Mark Abraham
[gmx-users] Force field for phosphoserine Justin Lemkul
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Justin Lemkul
[gmx-users] parachem GMX Justin Lemkul
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Anurag Dobhal
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Justin Lemkul
[gmx-users] g_rdf of differents proteins Yara Alves
[gmx-users] Martini force field - coarse grained protein tutorials David Ackerman
[gmx-users] Martini force field - coarse grained protein tutorials Justin Lemkul
[gmx-users] NPT Equilibrium? Johnny Lu
[gmx-users] Running jobs between different Gromacs versions Tsjerk Wassenaar
[gmx-users] (no subject) AINUN NIZAR M
[gmx-users] NPT Equilibrium? Tsjerk Wassenaar
[gmx-users] (no subject) César Ávila
[gmx-users] source cord routines for electric fields Makoto Yoneya
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Anurag Dobhal
[gmx-users] Suggestion for Umbrella sampling and CAS rama david
[gmx-users] Polymer parameter Lovika Moudgil
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Anurag Dobhal
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Justin Lemkul
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Justin Lemkul
[gmx-users] Polymer parameter Justin Lemkul
[gmx-users] Gromacs 5.0.2 no parallei run Jernej Zidar
[gmx-users] regarding GROMACS Tutorial KALP15 in DPPC Anurag Dobhal
[gmx-users] Gromacs 5.0.2 no parallei run Szilárd Páll
[gmx-users] Gromacs 5.0.2 no parallei run Szilárd Páll
[gmx-users] NPT Equilibrium? Johnny Lu
[gmx-users] source cord routines for electric fields Makoto Yoneya
[gmx-users] tail correction in surface tension Yu, Decai
[gmx-users] Why should I repeat my simulation? fatemeh ramezani
[gmx-users] Why should I repeat my simulation? Justin Lemkul
[gmx-users] How to calculate RMSD for each residue Mass
[gmx-users] Why should I repeat my simulation? massimo sandal
[gmx-users] Why should I repeat my simulation? João M. Damas
[gmx-users] constraint and restraints niyaz.sabir
[gmx-users] constraint and restraints Tsjerk Wassenaar
[gmx-users] Invalid order for directive bondtypes Atila Petrosian
[gmx-users] Suggestion on Umbrella sampling and peptide synthesis rama david
[gmx-users] Suggestion on Umbrella sampling and peptide design rama david
[gmx-users] Invalid order for directive bondtypes Mark Abraham
[gmx-users] Why should I repeat my simulation? Dr. Vitaly Chaban
[gmx-users] constraint and restraints niyaz.sabir
[gmx-users] Lithium Ions in Gromos53A6 Hardy, Adam
[gmx-users] do_dssp Mahboobeh Eslami
[gmx-users] Invalid order for directive bondtypes Atila Petrosian
[gmx-users] Invalid order for directive bondtypes Atila Petrosian
[gmx-users] can not split pdb beyond 1019 gromacs query
[gmx-users] Invalid order for directive bondtypes Mark Abraham
[gmx-users] constraint and restraints Tsjerk Wassenaar
[gmx-users] can not split pdb beyond 1019 Mark Abraham
[gmx-users] NVE Energy drop in Mixed Precision 4.6.7 Johnny Lu
[gmx-users] NVE Energy drop in Mixed Precision 4.6.7 Johnny Lu
[gmx-users] NVE Energy drop in Mixed Precision 4.6.7 Johnny Lu
[gmx-users] Can Gromacs do this? 折晓会
[gmx-users] Can Gromacs do this? Justin Lemkul
[gmx-users] Problem with constraints in NVT calculations. Kester Wong
[gmx-users] Polarisable (hydronium and hydroxide) model compatible with graphene? Kester Wong
[gmx-users] Non-integer charges when using scaled-topology files for REST2 simulation. Abhi Acharya
[gmx-users] NVE Energy drop in Mixed Precision 4.6.7 Guillaume Chevrot
[gmx-users] Non-integer charges when using scaled-topology files for REST2 simulation. Abhi Acharya
[gmx-users] Non-integer charges when using scaled-topology files for REST2 simulation. Scott Dean
[gmx-users] Mutation susanta haldar
[gmx-users] Non-integer charges when using scaled-topology files for REST2 simulation. David van der Spoel
[gmx-users] NVE Energy drop in Mixed Precision 4.6.7 Mark Abraham
[gmx-users] Regarding msd pratibha kapoor
[gmx-users] Problem with constraints in NVT calculations. Justin Lemkul
[gmx-users] Dead inflategro.pl link? andrew biedermann
[gmx-users] Dead inflategro.pl link? Justin Lemkul
[gmx-users] TPI calculation in desired coordinates Kim Q Hwan
[gmx-users] Problem with constraints in NVT calculations. Kester Wong
[gmx-users] Non-integer charges when using scaled-topology files for REST2 simulation. Abhi Acharya
[gmx-users] Regarding msd pratibha kapoor
[gmx-users] "Warning: For efficient BFGS minimization, use shift/switch/PME instead of cut-off" GAYATHRI S
[gmx-users] Non-integer charges when using scaled-topology files for REST2 simulation. David van der Spoel
[gmx-users] Regarding msd rajat desikan
[gmx-users] BASIC FOUNDATION/CONCEPTS used in GROMACS amitabh jayaswal
[gmx-users] Changing constraints algorithm. Dawid das
[gmx-users] Regarding msd Justin Lemkul
[gmx-users] "Warning: For efficient BFGS minimization, use shift/switch/PME instead of cut-off" Justin Lemkul
[gmx-users] Problem with constraints in NVT calculations. Justin Lemkul
[gmx-users] Changing constraints algorithm. Justin Lemkul
[gmx-users] BASIC FOUNDATION/CONCEPTS used in GROMACS Justin Lemkul
[gmx-users] Regarding msd rajat desikan
[gmx-users] BASIC FOUNDATION/CONCEPTS used in GROMACS Smith, Micholas D.
[gmx-users] Problem with constraints in NVT calculations. Kester Wong
[gmx-users] Gromacs Version 5.0.2 - Bug #1603 Siva Dasetty
[gmx-users] Gromacs Version 5.0.2 - Bug #1603 Mark Abraham
[gmx-users] BASIC FOUNDATION/CONCEPTS used in GROMACS Mirco Wahab
[gmx-users] TPI calculation in desired coordinates João M. Damas
[gmx-users] Gromacs Version 5.0.2 - Bug #1603 Siva Dasetty
[gmx-users] question about torsional potential fitting Victor Rosas Garcia
[gmx-users] question about torsional potential fitting André Farias de Moura
[gmx-users] Changing constraints algorithm. Dawid das
[gmx-users] question about torsional potential fitting Victor Rosas Garcia
[gmx-users] Gromacs Version 5.0.2 - Bug #1603 Mark Abraham
[gmx-users] Changing constraints algorithm. Mark Abraham
[gmx-users] Problem with constraints in NVT calculations. Justin Lemkul
[gmx-users] regarding generation of a topology file using Topolbuild Sahithya S Iyer
[gmx-users] regarding generation of a topology file using Topolbuild Bruce D. Ray
[gmx-users] atoms over 100,000 Albert
[gmx-users] atoms over 100,000 Erik Marklund
[gmx-users] atoms over 100,000 Albert
[gmx-users] atoms over 100,000 Erik Marklund
[gmx-users] atoms over 100,000 Albert
[gmx-users] atoms over 100,000 Justin Lemkul
[gmx-users] atoms over 100,000 Albert
[gmx-users] atoms over 100,000 Justin Lemkul
[gmx-users] Running free energy tutorial for ionic molecules vivek sharma
[gmx-users] v-rescale fatal error Kester Wong
[gmx-users] lipid membrane study and the increase in z dimension on dppc128.gro rama david
[gmx-users] do_dssp problem Mahboobeh Eslami
[gmx-users] do_dssp problem Mahboobeh Eslami
[gmx-users] do_dssp problem Marianne Schulte
[gmx-users] Problem with constraints in NVT calculations. Kester Wong
[gmx-users] Regarding spatial distribution data analysis Venkat Reddy
[gmx-users] v-rescale fatal error Mark Abraham
[gmx-users] v-rescale fatal error Kester Wong
[gmx-users] lipid membrane study and the increase in z dimension on dppc128.gro Justin Lemkul
[gmx-users] v-rescale fatal error Justin Lemkul
[gmx-users] Problem with constraints in NVT calculations. Justin Lemkul
[gmx-users] lipid membrane study and the increase in z dimension on dppc128.gro rama david
[gmx-users] lipid membrane study and the increase in z dimension on dppc128.gro Justin Lemkul
[gmx-users] lipid membrane study and the increase in z dimension on dppc128.gro rama david
[gmx-users] v-rescale fatal error Kester Wong
[gmx-users] v-rescale fatal error Mark Abraham
[gmx-users] Pres-XX and Pres-YY difference Johnny Lu
[gmx-users] Pres-XX and Pres-YY difference Johnny Lu
[gmx-users] Free Energy Change of Growing a Molecule Barnett, James W
[gmx-users] Pres-XX and Pres-YY difference Johnny Lu
[gmx-users] NVE Energy drop in Mixed Precision 4.6.7 Johnny Lu
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] intel compiler for AMD CPU? Albert
[gmx-users] Free Energy Change of Growing a Molecule Justin Lemkul
[gmx-users] Performance degradation for Verlet cutoff-scheme compared to group Олег Титов
[gmx-users] intel compiler for AMD CPU? Johnny Lu
[gmx-users] intel compiler for AMD CPU? Albert
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] intel compiler for AMD CPU? Johnny Lu
[gmx-users] intel compiler for AMD CPU? Szilárd Páll
[gmx-users] intel compiler for AMD CPU? Szilárd Páll
[gmx-users] NVE Energy drop in Mixed Precision 4.6.7 Mark Abraham
[gmx-users] Performance degradation for Verlet cutoff-scheme compared to group Mark Abraham
[gmx-users] Use NVT to mimic NVE Mark Abraham
[gmx-users] Pressure drop and atomic acceleration in nano-channel 朱文鹏
[gmx-users] Acetone parameters and transferability question Ioanna Styliari
[gmx-users] Use NVT to mimic NVE Antonio Baptista
[gmx-users] v-rescale fatal error Kester Wong
[gmx-users] Use NVT to mimic NVE Dr. Vitaly Chaban
[gmx-users] Use NVT to mimic NVE Michael Shirts
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Antonio Baptista
[gmx-users] Use NVT to mimic NVE Dr. Vitaly Chaban
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Dr. Vitaly Chaban
[gmx-users] Lithium Ions in Gromos53A6 Dr. Vitaly Chaban
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Acetone parameters and transferability question Justin Lemkul
[gmx-users] Gromacs API AnalysisData Class Yunlong Liu
[gmx-users] Use NVT to mimic NVE Dr. Vitaly Chaban
[gmx-users] Acetone parameters and transferability question Ioanna Styliari
[gmx-users] Gromacs API AnalysisData Class David van der Spoel
[gmx-users] Acetone parameters and transferability question Dr. Vitaly Chaban
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Dr. Vitaly Chaban
[gmx-users] Acetone parameters and transferability question Justin Lemkul
[gmx-users] Use NVT to mimic NVE Dr. Vitaly Chaban
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE David van der Spoel
[gmx-users] Use NVT to mimic NVE Dr. Vitaly Chaban
[gmx-users] Use NVT to mimic NVE Michael Shirts
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Acetone parameters and transferability question Ioanna Styliari
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Michael Shirts
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Acetone parameters and transferability question Justin Lemkul
[gmx-users] entangled polymer chain unipa
[gmx-users] entangled polymer chain Justin Lemkul
[gmx-users] asking for suggestings on conserved energy calcualtion in NVT when using V-rescale thermostat 执念
[gmx-users] Regarding umbrella samplling Sathish Kumar
[gmx-users] same input tpr same results? Albert
[gmx-users] asking for suggestings on conserved energy calcualtion in NVT when using V-rescale thermostat 执念
[gmx-users] Redirecting trajectories from one gmx module to another Machtens, Jan-Philipp
[gmx-users] Distance Restraints set for water-ion cluster in gas phase (vacuum) liuyong_1007 at dicp.ac.cn
[gmx-users] Performance degradation for Verlet cutoff-scheme compared to group Олег Титов
[gmx-users] Performance degradation for Verlet cutoff-scheme compared to group Mark Abraham
[gmx-users] same input tpr same results? Mark Abraham
[gmx-users] Redirecting trajectories from one gmx module to another Mark Abraham
[gmx-users] Performance degradation for Verlet cutoff-scheme compared to group Dr. Vitaly Chaban
[gmx-users] Regarding umbrella samplling Johnny Lu
[gmx-users] Regarding umbrella samplling Dr. Vitaly Chaban
[gmx-users] Distance Restraints set for water-ion cluster in gas phase (vacuum) Justin Lemkul
[gmx-users] Fatal error: Atom O in residue BTC 1 not found in rtp entry with 156 atoms while sorting atoms Nilesh Dhumal
[gmx-users] Fatal error: Atom O in residue BTC 1 not found in rtp entry with 156 atoms while sorting atoms Justin Lemkul
[gmx-users] TPI calculation in desired coordinates Kim Q Hwan
[gmx-users] PMF Profiles using Free Energy Perturbation(FEP) method. Kim Q Hwan
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Michael Shirts
[gmx-users] Performance degradation for Verlet cutoff-scheme compared to group Олег Титов
[gmx-users] Regarding umbrella samplling Sathish Kumar
[gmx-users] Regarding umbrella samplling Sathish Kumar
[gmx-users] Regarding umbrella samplling Justin Lemkul
[gmx-users] Regarding umbrella samplling Sathish Kumar
[gmx-users] Performance degradation for Verlet cutoff-scheme compared to group Szilárd Páll
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Mark Abraham
[gmx-users] Performance degradation for Verlet cutoff-scheme compared to group Олег Титов
[gmx-users] Error on gromacs running: Attempting to read a checkpoint file of version 15 with code of version 12 ookami a
[gmx-users] Error on gromacs running: Attempting to read a checkpoint file of version 15 with code of version 12 Justin Lemkul
[gmx-users] grompp Segmentation fault Nilesh Dhumal
[gmx-users] regarding confout.gro RINU KHATTRI
[gmx-users] Free energy calculation of Batdorj Batsaikhan
[gmx-users] Problem with constraints in NVT calculations. Kester Wong
[gmx-users] grompp Segmentation fault Justin Lemkul
[gmx-users] regarding confout.gro Justin Lemkul
[gmx-users] Problem with constraints in NVT calculations. Justin Lemkul
[gmx-users] grompp Segmentation fault Nilesh Dhumal
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation Wade
[gmx-users] Using Gpus on multiple nodes. (Feature #1591) Siva Dasetty
[gmx-users] Using Gpus on multiple nodes. (Feature #1591) Mark Abraham
[gmx-users] Using Gpus on multiple nodes. (Feature #1591) Siva Dasetty
[gmx-users] How long run should be enough for Free Energy Calculation of a protein? Batdorj Batsaikhan
[gmx-users] 2-D liquid Cai
[gmx-users] (no subject) Padmani Sandhu
[gmx-users] Using Gpus on multiple nodes. (Feature #1591) Trayder Thomas
[gmx-users] (no subject) Dr. Vitaly Chaban
[gmx-users] 2-D liquid Dr. Vitaly Chaban
[gmx-users] 2-D liquid Mirco Wahab
[gmx-users] retaining the active site water molecules in the protein -reg venkatesh s
[gmx-users] Fwd: Running free energy tutorial for ionic molecules vivek sharma
[gmx-users] regarding confout.gro RINU KHATTRI
[gmx-users] CAKot8D6knnhu1_vHLDfCzF-_Zsw+85jScMbho=st6Qg3P3JneQ at mail.gmail.com Padmani Sandhu
[gmx-users] Velocity Verlet integrator Mario Fernández Pendás
[gmx-users] How long run should be enough for Free Energy Calculation of a protein? Justin Lemkul
[gmx-users] Unstable system [was: (no subject)] Justin Lemkul
[gmx-users] regarding confout.gro Justin Lemkul
[gmx-users] retaining the active site water molecules in the protein -reg Justin Lemkul
[gmx-users] Velocity Verlet integrator Justin Lemkul
[gmx-users] Velocity Verlet integrator Mario Fernández Pendás
[gmx-users] Velocity Verlet integrator Michael Shirts
[gmx-users] Velocity Verlet integrator Mario Fernández Pendás
[gmx-users] Velocity Verlet integrator Michael Shirts
[gmx-users] how to build topology Victor Rosas Garcia
[gmx-users] Velocity Verlet integrator Mario Fernández Pendás
[gmx-users] Unstable system [was: (no subject)] Padmani Sandhu
[gmx-users] How to add iron parameter? Guangyu Zhu
[gmx-users] g_dist as an alternative for g_saltbr Diogo Martins de Sá
[gmx-users] How to add iron parameter? Johnny Lu
[gmx-users] g_dist as an alternative for g_saltbr Diogo Martins de Sá
[gmx-users] How to add iron parameter? Johnny Lu
[gmx-users] How to add iron parameter? Dr. Vitaly Chaban
[gmx-users] how to build topology Dr. Vitaly Chaban
[gmx-users] How to add iron parameter? Justin Lemkul
[gmx-users] Unstable system [was: (no subject)] Justin Lemkul
[gmx-users] g_dist as an alternative for g_saltbr Justin Lemkul
[gmx-users] how to build topology Victor Rosas Garcia
[gmx-users] how to build topology Justin Lemkul
[gmx-users] how to build topology Victor Rosas Garcia
[gmx-users] how to build topology Justin Lemkul
[gmx-users] how to build topology Victor Rosas Garcia
[gmx-users] Fwd: Running free energy tutorial for ionic molecules Dallas Warren
[gmx-users] Unstable system [was: (no subject)] Padmani Sandhu
[gmx-users] How long run should be enough for Free Energy Calculation of a protein? Batdorj Batsaikhan
[gmx-users] free energy calculation elham tazikeh
[gmx-users] Problem implementing REST carlo martinotti
[gmx-users] free energy of methan elham tazikeh
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] Fwd: How to calculate protein-surface interaction energy James Lord
[gmx-users] Fwd: How to calculate protein-surface interaction energy James Lord
[gmx-users] MD workstation Hadházi Ádám
[gmx-users] Problem implementing REST Mark Abraham
[gmx-users] MD workstation Mirco Wahab
[gmx-users] do_x3dna: A tool to analyze structural fluctuations of DNA/RNA during simulations rajendra kumar
[gmx-users] Unstable system [was: (no subject)] Justin Lemkul
[gmx-users] How long run should be enough for Free Energy Calculation of a protein? Justin Lemkul
[gmx-users] free energy calculation Justin Lemkul
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] The flat-bottomed position restrain in the topolgy file liuyong_1007 at dicp.ac.cn
[gmx-users] TWO AMINOACIDS WITH SAME NUMBER IN .GRO FILE Michetti Davide
[gmx-users] The flat-bottomed position restrain in the topolgy file Justin Lemkul
[gmx-users] TWO AMINOACIDS WITH SAME NUMBER IN .GRO FILE Justin Lemkul
[gmx-users] MD workstation Hadházi Ádám
[gmx-users] MD workstation Mirco Wahab
[gmx-users] Problem implementing REST carlo martinotti
[gmx-users] free energy calculation for methane elham tazikeh
[gmx-users] MD workstation Hadházi Ádám
[gmx-users] Turning off electrostatic interactions between two proteins Ozlem Ulucan
[gmx-users] Problem implementing REST Mark Abraham
[gmx-users] free energy calculation for methane Justin Lemkul
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation Mark Abraham
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation Mark Abraham
[gmx-users] error in free energy calculation elham tazikeh
[gmx-users] error in free energy calculation Justin Lemkul
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] Multiple writing to same trajectory issue Matthias Ernst
[gmx-users] Multiple writing to same trajectory issue Mark Abraham
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] BCAM Internship Position Announcement Mario Fernández Pendás
[gmx-users] Parameter conversion from GAFF to Gromacs Rohit Farmer
[gmx-users] Parameter conversion from GAFF to Gromacs Justin Lemkul
[gmx-users] Parameter conversion from GAFF to Gromacs Rohit Farmer
[gmx-users] MD workstation Szilárd Páll
[gmx-users] .gro file units Nilesh Dhumal
[gmx-users] .gro file units Eric Smoll
[gmx-users] MD workstation lloyd riggs
[gmx-users] pdb2gmx ffG43a1 force field Nilesh Dhumal
[gmx-users] MD workstation Hadházi Ádám
[gmx-users] Issue building 5.0.2 release for GPU Éric Germaneau
[gmx-users] Issue building 5.0.2 release for GPU Roland Schulz
[gmx-users] Issue building 5.0.2 release for GPU Éric Germaneau
[gmx-users] pdb2gmx ffG43a1 force field Justin Lemkul
[gmx-users] fatal error in gromacs Yaser Hosseini
[gmx-users] Not achieving any speedup using Open MPI Rytis Slatkevičius
[gmx-users] Not achieving any speedup using Open MPI Da-Wei Li
[gmx-users] Not achieving any speedup using Open MPI Johnny Lu
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] Simulation Crash Udaya Dahal
[gmx-users] Not achieving any speedup using Open MPI Rytis Slatkevičius
[gmx-users] Not achieving any speedup using Open MPI Mark Abraham
[gmx-users] MD workstation Szilárd Páll
[gmx-users] Not achieving any speedup using Open MPI Rytis Slatkevičius
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] Not achieving any speedup using Open MPI Mark Abraham
[gmx-users] Not achieving any speedup using Open MPI Szilárd Páll
[gmx-users] g_dist as an alternative for g _saltbr Diogo Martins de Sá
[gmx-users] g_dist as an alternative for g _saltbr Diogo Martins de Sá
[gmx-users] How to calculate protein-surface interaction energy Diogo Martins de Sá
[gmx-users] How to calculate protein-surface interaction energy Diogo Martins de Sá
[gmx-users] fatal error in gromacs Justin Lemkul
[gmx-users] pressure dependence on volume. Justin Lemkul
[gmx-users] g_dist as an alternative for g _saltbr Justin Lemkul
[gmx-users] pdb2gmx ffG43a1 force field Nilesh Dhumal
[gmx-users] pdb2gmx ffG43a1 force field Justin Lemkul
[gmx-users] g_dist as an alternative for g _saltbr Diogo Martins de Sá
[gmx-users] pdb2gmx ffG43a1 force field Nilesh Dhumal
[gmx-users] g_dist as an alternative for g _saltbr Justin Lemkul
[gmx-users] pdb2gmx ffG43a1 force field Justin Lemkul
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] Understanding comments in pdb2gmx output Agnivo Gosai
[gmx-users] Understanding comments in pdb2gmx output Johnny Lu
[gmx-users] Understanding comments in pdb2gmx output Justin Lemkul
[gmx-users] SWM4-NDP force field Kester Wong
[gmx-users] free energy for ethanol elham tazikeh
[gmx-users] lipid membrane study and the increase in z dimension on dppc128.gro rama david
[gmx-users] pressure dependence on volume. Dr. Vitaly Chaban
[gmx-users] SWM4-NDP force field Dr. Vitaly Chaban
[gmx-users] pressure dependence on volume. Tsjerk Wassenaar
[gmx-users] free energy for ethanol Justin Lemkul
[gmx-users] lipid membrane study and the increase in z dimension on dppc128.gro Justin Lemkul
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 126, Issue 66 Wade
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] Check for Vacuum Bubbles & Density Johnny Lu
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Wade
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Johnny Lu
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Johnny Lu
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Johnny Lu
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Mark Abraham
[gmx-users] Understanding comments in pdb2gmx output Agnivo Gosai
[gmx-users] boron atom parameter fatemeh ramezani
[gmx-users] Understanding comments in pdb2gmx output Justin Lemkul
[gmx-users] boron atom parameter Justin Lemkul
[gmx-users] MD workstation Szilárd Páll
[gmx-users] boron atom parameter Justin Lemkul
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Use NVT to mimic NVE Johnny Lu
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Johnny Lu
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Johnny Lu
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Johnny Lu
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Johnny Lu
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] How to calculate protein-surface interaction energy Diogo Martins de Sá
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] pressure dependence on volume. Tsjerk Wassenaar
[gmx-users] How long run should be enough for Free Energy Calculation of a protein? Batdorj Batsaikhan
[gmx-users] How long run should be enough for Free Energy Calculation of a protein? Batdorj Batsaikhan
[gmx-users] free energy problem elham tazikeh
[gmx-users] how to treat the peptide apart from the ligand -reg venkatesh s
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] free energy problem Justin Lemkul
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] NaCl force field with GROMOS 54A7 Jason Grosch
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Wade
[gmx-users] Conserved energy ("Conserved En.") in NVT simulation (Wade) Johnny Lu
[gmx-users] NaCl force field with GROMOS 54A7 Thomas Piggot
[gmx-users] how to treat the peptide apart from the ligand -reg venkatesh s
[gmx-users] how to treat the peptide apart from the ligand -reg Justin Lemkul
[gmx-users] Understanding comments in pdb2gmx output Mark Abraham
[gmx-users] pressure dependence on volume. Mark Abraham
[gmx-users] change the mode Gianfranco Bocchinfuso
[gmx-users] OPLSAA Eric Smoll
[gmx-users] Parameter dump Eric Smoll
[gmx-users] pressure dependence on volume. Dr. Vitaly Chaban
[gmx-users] Parameter dump Dallas Warren
[gmx-users] OPLSAA Justin Lemkul
[gmx-users] SWM4-NDP force field Kester Wong
[gmx-users] free energy question elham tazikeh
[gmx-users] SWM4-NDP force field Dr. Vitaly Chaban
[gmx-users] OPLSAA Dr. Vitaly Chaban
[gmx-users] free energy question Justin Lemkul
[gmx-users] free energy calculation RINU KHATTRI
[gmx-users] How to calculate protein-surface interaction energy James Lord
[gmx-users] pressure dependence on volume. Johnny Lu
[gmx-users] free energy calculation Justin Lemkul
[gmx-users] How to calculate protein-surface interaction energy Justin Lemkul
[gmx-users] help 玻耳兹曼
[gmx-users] MD workstation Hadházi Ádám
[gmx-users] help Justin Lemkul
[gmx-users] Fatal error:No molecules were defined in the system Nilesh Dhumal
[gmx-users] Fatal error:No molecules were defined in the system Justin Lemkul
[gmx-users] Fatal error:No molecules were defined in the system Nilesh Dhumal
[gmx-users] Fatal error:No molecules were defined in the system Justin Lemkul
[gmx-users] Accelerated MD Douglas Houston
[gmx-users] difference between Pulling and Acceleration? Tom
[gmx-users] Calculating intermolecular water interactions Jackson Chief Elk
[gmx-users] Membrane simulations lloyd riggs
[gmx-users] Force field for unstructured protein Netaly Khazanov
[gmx-users] Static structure factor Francesco Mambretti
[gmx-users] Force field for unstructured protein ms
[gmx-users] CHARMM-GUI: new features for GROMACS Justin Lemkul
[gmx-users] difference between Pulling and Acceleration? Justin Lemkul
[gmx-users] Membrane simulations Smith, Micholas D.
[gmx-users] Calculating intermolecular water interactions Justin Lemkul
[gmx-users] Membrane simulations Justin Lemkul
[gmx-users] Calculating intermolecular water interactions Jackson Chief Elk
[gmx-users] question about topologies Marcello Cammarata
[gmx-users] question about topologies Justin Lemkul
[gmx-users] GPU performance in Gromacs 5 Jian Yin
[gmx-users] Segmentation fault while diagonalizing covariance matrix using g_covar Mendez Giraldez, Raul
[gmx-users] grompp fatal error in GROMACS version 4.5.7 Agnivo Gosai
[gmx-users] grompp fatal error in GROMACS version 4.5.7 Justin Lemkul
[gmx-users] it is very slowly to run gromacs with OpenMPI Vinson Leung
[gmx-users] charge group moved too far between two domain decomposition steps? Kester Wong
[gmx-users] charge group moved too far between two domain decomposition steps? Mark Abraham
[gmx-users] it is very slowly to run gromacs with OpenMPI Mark Abraham
[gmx-users] Segmentation fault while diagonalizing covariance matrix using g_covar Mark Abraham
[gmx-users] charge group moved too far between two domain decomposition step Kester Wong
[gmx-users] GPU performance in Gromacs 5 Carsten Kutzner
[gmx-users] add Mn in itp file yaser
[gmx-users] charge group moved too far between two domain decomposition step Mark Abraham
[gmx-users] Gromacs 5.0.2 installation on Stampede Amrash
[gmx-users] add Mn in itp file Justin Lemkul
[gmx-users] Implementation of SHAKE Mario Fernández Pendás
[gmx-users] Understanding g_energy output in GROMACS 4.5.7 Agnivo Gosai
[gmx-users] Understanding g_energy output in GROMACS 4.5.7 Justin Lemkul
[gmx-users] Gromacs 5.0.2 installation on Stampede Roland Schulz
[gmx-users] run g-msd using more than one core Xiaobin Cao
[gmx-users] run g-msd using more than one core Justin Lemkul
[gmx-users] Implementation of SHAKE Mark Abraham
[gmx-users] charge group moved too far between two domain decomposition step Kester Wong
[gmx-users] add Mn in itp file andrea
[gmx-users] Implementation of SHAKE Mario Fernández Pendás
[gmx-users] Accelerated MD Patrick Fuchs
[gmx-users] how can i install sse4.1 and avx_256 Yaser Hosseini
[gmx-users] how to generate executable file "g_energy_mpi" ? Vinson Leung
[gmx-users] how can i install sse4.1 and avx_256 Milan Melicherčík
[gmx-users] how to generate executable file "g_energy_mpi" ? Justin Lemkul
[gmx-users] charge group moved too far between two domain decomposition step Justin Lemkul
[gmx-users] how can i install sse4.1 and avx_256 Justin Lemkul
[gmx-users] how to generate executable file "g_energy_mpi" ? Vinson Leung
[gmx-users] how to generate executable file "g_energy_mpi" ? Justin Lemkul
[gmx-users] how to generate executable file "g_energy_mpi" ? Vinson Leung
[gmx-users] how to generate executable file "g_energy_mpi" ? Justin Lemkul
[gmx-users] how to generate executable file "g_energy_mpi" ? Vinson Leung
[gmx-users] how to generate executable file "g_energy_mpi" ? Justin Lemkul
[gmx-users] how to generate executable file "g_energy_mpi" ? Vinson Leung
[gmx-users] binding Free energy Urszula Uciechowska
[gmx-users] binding Free energy Justin Lemkul
[gmx-users] binding Free energy Erik Marklund
[gmx-users] binding Free energy andrea
[gmx-users] Question Eric Smoll
[gmx-users] Question Justin Lemkul
[gmx-users] Question Eric Smoll
[gmx-users] error in the middle of running mdrun_mpi Nizar Masbukhin
[gmx-users] error in the middle of running mdrun_mpi Mark Abraham
[gmx-users] charge group moved too far between two domain decomposition step Kester Wong
[gmx-users] charge group moved too far between two domain decomposition step Justin Lemkul
[gmx-users] Conserved quantity in NPT simulations Paolo Franz
[gmx-users] installing on macbook Suraya Abdul Sani
[gmx-users] installing on macbook Justin Lemkul
[gmx-users] Conserved quantity in NPT simulations Michael Shirts
[gmx-users] installing on macbook Nizar Masbukhin
[gmx-users] error in the middle of running mdrun_mpi Nizar Masbukhin
[gmx-users] error in the middle of running mdrun_mpi Justin Lemkul
[gmx-users] use of Walls in Martini simulations Ramon Reigada
[gmx-users] numerical matrix from xpm file João M. Damas
[gmx-users] use of Walls in Martini simulations HANNIBAL LECTER
[gmx-users] Multiple writing to same trajectory issue Matthias Ernst
[gmx-users] Question about "Walls" ramon
[gmx-users] Cannot combine residue position based cog selection with index output for g_select Huang Dongxu
[gmx-users] Simulating Multiple Solute Particles Nathan K Houtz
[gmx-users] To: gmx users p David de Sancho
[gmx-users] Simulating Multiple Solute Particles Mark Abraham
[gmx-users] In itp file from prodrg, what is C0 and C1 in bonds, angles and dihedrals section fatemeh ramezani
[gmx-users] In itp file from prodrg, what is C0 and C1 in bonds, angles and dihedrals section Justin Lemkul
[gmx-users] In itp file from prodrg, what is C0 and C1 in bonds, angles and dihedrals section Justin Lemkul
[gmx-users] Simulating Multiple Solute Particles Dr. Vitaly Chaban
[gmx-users] Cannot combine residue position based cog selection with index output for g_select Mark Abraham
[gmx-users] error in the middle of running mdrun_mpi Nizar Masbukhin
[gmx-users] error in the middle of running mdrun_mpi Justin Lemkul
[gmx-users] error in the middle of running mdrun_mpi Nizar Masbukhin
[gmx-users] histo-clust.xvg from g_clustsize Dr. Vitaly Chaban
[gmx-users] g_distMat: A tool to calculate average min-distance matrix on multiple CPU cores rajendra kumar
[gmx-users] how to make statistics? Albert
[gmx-users] trjconv gets stuck on frame Eric Smoll
[gmx-users] Selecting box dimension and COM position - Pull Code Agnivo Gosai
[gmx-users] Umbrella Sampling tutorial by Dr. Justin Lemkul Agnivo Gosai
[gmx-users] Time averaged ramachandran plot Sanku M
[gmx-users] trjconv gets stuck on frame Mark Abraham
[gmx-users] how to make statistics? Mark Abraham
[gmx-users] trjconv gets stuck on frame Eric Smoll
[gmx-users] error in the middle of running mdrun_mpi Justin Lemkul
[gmx-users] Selecting box dimension and COM position - Pull Code Justin Lemkul
[gmx-users] Umbrella Sampling tutorial by Dr. Justin Lemkul Justin Lemkul
[gmx-users] Time averaged ramachandran plot Justin Lemkul
[gmx-users] Simulating Multiple Solute Particles Nathan K Houtz
[gmx-users] Simulating Multiple Solute Particles Justin Lemkul
[gmx-users] Integrity of .trr file + center coordinates Eric Smoll
[gmx-users] How to save trajectories of our interest into vmd Seera Suryanarayana
[gmx-users] How to save trajectories of our interest into vmd Vinay Randhawa
[gmx-users] MD workstation for Gromacs Mohammad Hossein Borghei
[gmx-users] MD workstation for Gromacs Carsten Kutzner
[gmx-users] error in the middle of running mdrun_mpi Nizar Masbukhin
[gmx-users] Time averaged ramachandran plot andrea
[gmx-users] Time averaged ramachandran plot andrea
[gmx-users] trjconv gets stuck on frame Mark Abraham
[gmx-users] trjconv gets stuck on frame Eric Smoll
[gmx-users] How to save trajectories of our interest into vmd Justin Lemkul
[gmx-users] error in the middle of running mdrun_mpi Justin Lemkul
[gmx-users] Time averaged ramachandran plot Tsjerk Wassenaar
[gmx-users] trjconv gets stuck on frame Mark Abraham
[gmx-users] MD workstation for Gromacs Adelman, Joshua Lev
[gmx-users] MD workstation for Gromacs Abhi Acharya
[gmx-users] webpage for searching gromacs mailing archive Sanku M
[gmx-users] Naughty Vacuum Bubble in our Vesicle! Björn Sommer
[gmx-users] Naughty Vacuum Bubble in our Vesicle! André Farias de Moura
[gmx-users] Naughty Vacuum Bubble in our Vesicle! rajat desikan
[gmx-users] webpage for searching gromacs mailing archive Justin Lemkul
[gmx-users] error in the middle of running mdrun_mpi Nizar Masbukhin
[gmx-users] Naughty Vacuum Bubble in our Vesicle ABEL Stephane 175950
[gmx-users] graphene top file fatemeh ramezani
[gmx-users] Naughty Vacuum Bubble in our Vesicle Björn Sommer
[gmx-users] error in the middle of running mdrun_mpi Mark Abraham
[gmx-users] Naughty Vacuum Bubble in our Vesicle rajat desikan
[gmx-users] Naughty Vacuum Bubble in our Vesicle André Farias de Moura
[gmx-users] Using make_ndx to couple molecules before pulling simulation Agnivo Gosai
[gmx-users] Using make_ndx to couple molecules before pulling simulation Justin Lemkul
[gmx-users] graphene top file Justin Lemkul
[gmx-users] Naughty Vacuum Bubble in our Vesicle Björn Sommer
[gmx-users] error in the middle of running mdrun_mpi Nizar Masbukhin
[gmx-users] error in the middle of running mdrun_mpi Nizar Masbukhin
[gmx-users] error in the middle of running mdrun_mpi Justin Lemkul
[gmx-users] Naughty Vacuum Bubble in our Vesicle Justin Lemkul
[gmx-users] question about walls for a simple water box ramon
[gmx-users] question about walls for a simple water box Urszula Uciechowska
[gmx-users] Martini + Elnedyn Adriana Garro
[gmx-users] Martini + Elnedyn Tsjerk Wassenaar
[gmx-users] How fshift array works? jia jia
[gmx-users] Martini + Elnedyn Adriana Garro
[gmx-users] How fshift array works? David van der Spoel
[gmx-users] The last line in a .gro file Agnivo Gosai
[gmx-users] Calculating intermolecular energies of water Jackson Chief Elk
[gmx-users] Calculating intermolecular energies of water David van der Spoel
[gmx-users] Calculating intermolecular energies of water Mark Abraham
[gmx-users] The last line in a .gro file Mark Abraham
[gmx-users] The last line in a .gro file Tsjerk Wassenaar
[gmx-users] Calculating intermolecular energies of water Jackson Chief Elk
[gmx-users] combine tpr files? Urszula Uciechowska
[gmx-users] Silica monolayer with Martini force field RAMON REIGADA SANZ
[gmx-users] combine tpr files? Justin Lemkul
[gmx-users] Free energy in implicit solvent Nizar Masbukhin
[gmx-users] pdb2gmx Eric Smoll
[gmx-users] How to implement LJ 6-12 function form? Kester Wong
[gmx-users] How to implement LJ 6-12 function form? Eric Smoll
[gmx-users] How to implement LJ 6-12 function form? Kester Wong
[gmx-users] How to implement LJ 6-12 function form? David van der Spoel
[gmx-users] Free energy in implicit solvent David van der Spoel
[gmx-users] force-switch as vdv-modifier Chandan Choudhury
[gmx-users] Naughty Vacuum Bubble in our Vesicle Patrick Fuchs
[gmx-users] force-switch as vdv-modifier Mark Abraham
[gmx-users] pdb2gmx Mark Abraham
[gmx-users] Long bond streches during simulations Seera Suryanarayana
[gmx-users] Long bond streches during simulations Justin Lemkul
[gmx-users] Calculating intermolecular energies of water Justin Lemkul
[gmx-users] Assigning mass to a virtual site Kester Wong
[gmx-users] force-switch as vdv-modifier Chandan Choudhury
[gmx-users] Segmentation fault Vo Cam Quy
[gmx-users] bennet acceptance ratio Ahmet yıldırım
[gmx-users] Centring a protein complex Rohit Farmer
[gmx-users] Assigning mass to a virtual site Justin Lemkul
[gmx-users] force-switch as vdv-modifier Justin Lemkul
[gmx-users] Segmentation fault Justin Lemkul
[gmx-users] Centring a protein complex Justin Lemkul
[gmx-users] Pressure coupling and liquid crystals Todor Antonijevic
[gmx-users] force-switch as vdv-modifier Mark Abraham
[gmx-users] GLY dihedrals in amber03 family force fields Tomek Wlodarski
[gmx-users] GLY dihedrals in amber03 family force fields Justin Lemkul
[gmx-users] GLY dihedrals in amber03 family force fields Tomek Wlodarski
[gmx-users] Query of RMSD results Sainitin Donakonda
[gmx-users] Centring a protein complex Rohit Farmer
[gmx-users] Assigning mass to a virtual site David van der Spoel
[gmx-users] GLY dihedrals in amber03 family force fields Justin Lemkul
[gmx-users] Query of RMSD results Smith, Micholas D.
[gmx-users] Assigning mass to a virtual site Justin Lemkul
[gmx-users] Centring a protein complex Justin Lemkul
[gmx-users] Naughty Vacuum Bubble in our Vesicle André Farias de Moura
[gmx-users] Query of RMSD results Sainitin Donakonda
[gmx-users] Query of RMSD results Justin Lemkul
[gmx-users] Pressure coupling and liquid crystals André Farias de Moura
[gmx-users] Assigning mass to a virtual site Kester Wong
[gmx-users] Silica monolayer with Martini force field André Farias de Moura
[gmx-users] Assigning mass to a virtual site David van der Spoel
[gmx-users] build itp file using martinize.py Adriana Garro
[gmx-users] gmx morse potential in manual Robson da Silva
[gmx-users] pdb2gmx Eric Smoll
[gmx-users] pdb2gmx Eric Smoll
[gmx-users] pdb2gmx Justin Lemkul
[gmx-users] pdb2gmx Justin Lemkul
[gmx-users] Understanding the results of NVT simulation Agnivo Gosai
[gmx-users] How fshift array works? jia jia
[gmx-users] Packmol starting .pdb and proper equilibration Ioanna Styliari
[gmx-users] Understanding the results of NVT simulation Dr. Vitaly Chaban
[gmx-users] Packmol starting .pdb and proper equilibration Dr. Vitaly Chaban
[gmx-users] Pressure coupling and liquid crystals Dr. Vitaly Chaban
[gmx-users] Long bond streches during simulations Dr. Vitaly Chaban
[gmx-users] Silica monolayer with Martini force field Dr. Vitaly Chaban
[gmx-users] Silica monolayer with Martini force field André Farias de Moura
[gmx-users] Dangling bond error, -ter does not fix LIPSCOMB, THOMAS
[gmx-users] build itp file using martinize.py Tsjerk Wassenaar
[gmx-users] pseudo-random algorithm Johnny Lu
[gmx-users] pseudo-random algorithm Roland Schulz
[gmx-users] Packmol starting .pdb and proper equilibration Justin Lemkul
[gmx-users] Dangling bond error, -ter does not fix Justin Lemkul
[gmx-users] Understanding the results of NVT simulation Dallas Warren
[gmx-users] Assigning mass to a virtual site Kester Wong
[gmx-users] Pressure coupling and liquid crystals Todor Antonijevic
[gmx-users] Regarding the Pi-Pi and pi-cation interaction rama david
[gmx-users] Regarding umbrella samplling Sathish Kumar
[gmx-users] NPT Simulation average pressure lower than Reference set pressure Agnivo Gosai
[gmx-users] About the output information Vinson Leung
[gmx-users] NPT Simulation average pressure lower than Reference set pressure Dan Sponseller
[gmx-users] NPT Simulation average pressure lower than Reference set pressure Tsjerk Wassenaar
[gmx-users] why the gas ethanol system has positive potential? David van der Spoel
[gmx-users] why the gas ethanol system has positive potential? Tsjerk Wassenaar
[gmx-users] Cannot rename checkpoint file Kannan S
[gmx-users] Regarding the Pi-Pi and pi-cation interaction Ivan Gladich
[gmx-users] MD for DNA structure Urszula Uciechowska
[gmx-users] Packmol starting .pdb and proper equilibration Ioanna Styliari
[gmx-users] Regarding the Pi-Pi and pi-cation interaction rama david
[gmx-users] hbond analysis Urszula Uciechowska
[gmx-users] Regarding umbrella samplling Justin Lemkul
[gmx-users] About the output information Justin Lemkul
[gmx-users] Cannot rename checkpoint file Justin Lemkul
[gmx-users] MD for DNA structure Justin Lemkul
[gmx-users] Regarding the Pi-Pi and pi-cation interaction Justin Lemkul
[gmx-users] Regarding the Pi-Pi and pi-cation interaction Justin Lemkul
[gmx-users] Packmol starting .pdb and proper equilibration Justin Lemkul
[gmx-users] hbond analysis Justin Lemkul
[gmx-users] Regarding the Pi-Pi and pi-cation interaction rama david
[gmx-users] SR and 14 terms for LJ and Coulomb interactions Turgay Cakmak
[gmx-users] Regarding the Pi-Pi and pi-cation interaction Ivan Gladich
[gmx-users] SR and 14 terms for LJ and Coulomb interactions Mark Abraham
[gmx-users] Regarding the Pi-Pi and pi-cation interaction Justin Lemkul
[gmx-users] g_spatial Stella Nickerson
[gmx-users] Spacial density map Stella Nickerson
[gmx-users] Spacial density map Dallas Warren
[gmx-users] mdrun error message in Computing Cluster Agnivo Gosai
[gmx-users] Free energy in implicit solvent Nizar Masbukhin
[gmx-users] Version 12 lloyd riggs
[gmx-users] Version 12 Mark Abraham
[gmx-users] mdrun error message in Computing Cluster Mark Abraham
[gmx-users] Spacial density map andrea spitaleri
[gmx-users] Regarding the Pi-Pi and pi-cation interaction Dr. Vitaly Chaban
[gmx-users] NPT Simulation average pressure lower than Reference set pressure Dr. Vitaly Chaban
[gmx-users] Packmol starting .pdb and proper equilibration Dr. Vitaly Chaban
[gmx-users] build itp file using martinize.py Adriana Garro
[gmx-users] NPT Simulation average pressure lower than Reference set pressure Smith, Micholas D.
[gmx-users] helix twisted angle? Albert
[gmx-users] build itp file using martinize.py Tsjerk Wassenaar
[gmx-users] Conserved quantity in NPT simulations Paolo Franz
[gmx-users] trjcat Eric Smoll
[gmx-users] trjcat Tsjerk Wassenaar
[gmx-users] trjcat Naga Rajesh Tummala
[gmx-users] trjcat Eric Smoll
[gmx-users] trjcat Tsjerk Wassenaar
[gmx-users] helix twisted angle? Tsjerk Wassenaar
[gmx-users] NPT Simulation average pressure lower than Reference set pressure Agnivo Gosai
[gmx-users] NPT Simulation average pressure lower than Reference set pressure Tsjerk Wassenaar
[gmx-users] NPT Simulation average pressure lower than Reference set pressure Tsjerk Wassenaar

Last message date: Fri Oct 31 21:38:06 CET 2014
Archived on: Fri Oct 31 21:38:07 CET 2014

Messages sorted by: [ thread ] [ subject ] [ author ]
More info on this list...

This archive was generated by Pipermail 0.09 (Mailman edition).