[gmx-users] Use NVT to mimic NVE

Antonio Baptista baptista at itqb.unl.pt
Sat Oct 11 18:41:58 CEST 2014


Then, run true NVE, for the reasons we already pointed.

On Sat, 11 Oct 2014, Johnny Lu wrote:

> For dynamics with correct rate and correct fluctuation.
>
> On Sat, Oct 11, 2014 at 8:09 AM, Dr. Vitaly Chaban <vvchaban at gmail.com>
> wrote:
>
>> what is it needed for?
>>
>>
>>
>> Dr. Vitaly V. Chaban
>>
>> Виталий Витальевич ЧАБАН
>>
>>
>> On Fri, Oct 10, 2014 at 7:41 PM, Johnny Lu <johnny.lu128 at gmail.com> wrote:
>> > Hi.
>> >
>> > Is it a good idea to mimic NVE by a NVT simulation with a large
>> temperature
>> > coupling time constant, to reduce the effect of the thermostat ?
>> >
>> > If I use V-rescale thermostat, what artifacts will the simulation get if
>> I
>> > use a large coupling time (say, 500 ps) and single precision gromacs ?
>> >
>> > Thank you.
>> > --
>> > Gromacs Users mailing list
>> >
>> > * Please search the archive at
>> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
>> posting!
>> >
>> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>> >
>> > * For (un)subscribe requests visit
>> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
>> send a mail to gmx-users-request at gromacs.org.
>> --
>> Gromacs Users mailing list
>>
>> * Please search the archive at
>> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
>> posting!
>>
>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>>
>> * For (un)subscribe requests visit
>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
>> send a mail to gmx-users-request at gromacs.org.
>>
> -- 
> Gromacs Users mailing list
>
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.


More information about the gromacs.org_gmx-users mailing list