[gmx-users] boron atom parameter

[fatemeh ramezani]

Dear gmx users
I am performing a simulation by gromacs. My ligand molecule has a boron atom and by topology builder softwares such as prodrg, ATB, swiss param, antechamber I get an error that boron atom is not supported by this program.

Do you have any propose for solute this problem? How can I build a top file for this ligand?

regards
 
Fatemeh Ramezani