[gmx-users] Calculating intermolecular energies of water

[David van der Spoel]

On 2014-10-28 18:12, Jackson Chief Elk wrote:
> Hi,
> When using g_energy to calculate short-range Coulomb interactions between a dynamically sized group of water, made with g_select, does the output contain both bonded and non bonded contributions?
> Jackson
>
I don't think this is possible at all. You need to define energy groups 
before your simulation.

-- 
David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
spoel at xray.bmc.uu.se    http://folding.bmc.uu.se