[gmx-users] Making trajectory movie last longer.

[Dawid das]

No, I don't mean noise :).

What I mean is that next frame appears on the screen before I can take a
good look at previous one.
So imagine that you make a presentation and you change each slide after
0.1 s. You can't have a
good look at it so let's say I need 2 s to have a good look.

I hope now you understand better what I mean.


2014-09-03 14:41 GMT+01:00 andrea <andrea.spitaleri at iit.it>:

> Hi,
> when you say "too quickly" are you referring to the "noise" I guess.
> If it is the case, you could try to filter you xtc either with g_filter in
> order to reduce the fluctuactions or in vmd itself you can smooth the xtc
> in the graphical representations -> trajectory tab -> trajectory smooting
> (2 or 3 should be enough)
>
> hope it helps
>
> and
>
>
>
> On 03/09/2014 15:35, Dawid das wrote:
>
>> Dear Gromacs experts,
>>
>> I have a question not regarding Gromacs itself but maybe you found a
>> solution.
>>
>> I have already solved this problem but not for GROMACS files.
>> I want to make a trajectory movie using VMD, but following frames appear
>> too quickly and it is very hard to actually see and analyze how
>> chromophore
>> structure changes over time. So I want to make the movie last longer and
>> the frames to be be displayed for a longer timer.
>>
>> I did it for Tinker trajectory snapshots by uploading the same snapshot 5
>> or 7 times but how to do it with *gro and *trr files from Gromacs?
>>
>> Best wishes,
>> Dawid Grabarek
>>
>> PS Maybe you suggest to use different prorgram?
>>
>
> --
> -------------------------------------------------------
> Andrea Spitaleri PhD
> Principal Investigator AIRC
> D3 - Drug Discovery & Development
> Istituto Italiano di Tecnologia
> Via Morego, 30 16163 Genova
> cell: +39 3485188790
> http://www.iit.it/en/d3-people/andrea-spitaleri.html
> ORCID: http://orcid.org/0000-0003-3012-3557
>
> --
> Gromacs Users mailing list
>
> * Please search the archive at http://www.gromacs.org/
> Support/Mailing_Lists/GMX-Users_List before posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>