[gmx-users] g_mindist for hydrophobic interactions

Ca C. devila8 at hotmail.com
Mon Sep 8 10:25:29 CEST 2014

Dear All,
I have to verify if some hydrophobic residues, during the simulation, conserve their interactions and make a "cross talk" for receptor's transactivation.
Is g_mindist a good tool for this purpose? Do you have more suggestions?
Moreover, should I use trjconv for pbc treatment before running g_mindist?

Thank you in advance

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