[gmx-users] g_mindist for hydrophobic interactions

Erik Marklund erik.marklund at chem.ox.ac.uk
Mon Sep 8 12:17:17 CEST 2014

Another option is g_hbond -contact.

On 8 Sep 2014, at 09:25, Ca C. <devila8 at hotmail.com> wrote:

> Dear All,
> I have to verify if some hydrophobic residues, during the simulation, conserve their interactions and make a "cross talk" for receptor's transactivation.
> Is g_mindist a good tool for this purpose? Do you have more suggestions?
> Moreover, should I use trjconv for pbc treatment before running g_mindist?
> Thank you in advance
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