[gmx-users] 2D diagram

[Andrei Neamtu]

Hi,

Maybe this is not a directly related Gromacs question, but:

I have performed a md simulation of a protein in water, and I want to
follow for certain amino acids exposure to solvent and nearby contacting
residues.
Does anyone know a program for drawing synthetic 2D diagrams of
interactions/contacts between a residue and its spatial neighbors from an
PDB file?

Many thanks,

Andrei











*Dr. Andrei Neamtu, PhD, Lecturer Department of Physiology "Gr. T. Popa"
University of Medicine and Pharmacy of Iasi http://www.umfiasi.ro/
<http://www.umfiasi.ro/> Str. Universitatii nr. 16 IASI, Jud. Iasi ROMANIA*