[gmx-users] 2D diagram

[andrea]

Hi,

try either ligplot or ligplot+

and


On 10/09/2014 11:21, Andrei Neamtu wrote:
> Hi,
>
> Maybe this is not a directly related Gromacs question, but:
>
> I have performed a md simulation of a protein in water, and I want to
> follow for certain amino acids exposure to solvent and nearby contacting
> residues.
> Does anyone know a program for drawing synthetic 2D diagrams of
> interactions/contacts between a residue and its spatial neighbors from an
> PDB file?
>
> Many thanks,
>
> Andrei
>
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> *Dr. Andrei Neamtu, PhD, Lecturer Department of Physiology "Gr. T. Popa"
> University of Medicine and Pharmacy of Iasi http://www.umfiasi.ro/
> <http://www.umfiasi.ro/> Str. Universitatii nr. 16 IASI, Jud. Iasi ROMANIA*

-- 
-------------------------------------------------------
Andrea Spitaleri PhD
Principal Investigator AIRC
D3 - Drug Discovery & Development
Istituto Italiano di Tecnologia
Via Morego, 30 16163 Genova
cell: +39 3485188790
http://www.iit.it/en/d3-people/andrea-spitaleri.html
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