[gmx-users] Martini force field - coarse grained protein tutorials

Sridhar Kumar Kannam srisriphy at gmail.com
Sun Sep 14 12:41:15 CEST 2014

Hi All,

I am a newbie to Gromacs and Martini force field. I begin with the
tutorials - http://md.chem.rug.nl/cgmartini/index.php/proteins

As this tutorial does not provide the .mdp files I have tried to built the
.mdp files based on other Gromacs tutorials. But when I run the simulations
I am getting different kinds of error. As I have not read the manual yet,
its hard to debug the errors. Can someone please share the *mdp files to
run this tutorial (Ubiquitin and HIV-Prtease) simulations.

Thank you.

Cheers !!!
Sridhar  Kumar Kannam :)

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