[gmx-users] PBC problem in bilayer system

[shahab shariati]

Dear Justin

Based on your previous reply, I used following:

trjconv -f *.xtc -s *.tpr -n *.ndx -o **.xtc  -pbc mol –trans 0 0 7


When I see **.xtc using vmd, unfortunately, problem was not solved.


Please see the following link:

https://www.dropbox.com/s/345o7lvc9z4jwln/figure%204.TIF?dl=0