[gmx-users] Generating topology file containing HYP

[sang eun jee]

Dear Ming Tang

As long as I know, Discovery studio visualizer can do the mutation from
proline to hydroxyproline in a simple way.

Hope it helps,

Sangeun Jee

On Wed, Apr 29, 2015 at 5:42 AM, Ming Tang <m21.tang at qut.edu.au> wrote:

> Dear all,
>
> I have a pdb file, and need to convert some of the proline to
> hydroxyproline. Can I use pdb2gmx to convert proline to hydroxyproline when
> generating the topology file?  If I cannot, then which kind of software can
> be used to convert proline to hydroxyproline when generating the topology
> file?
>
> Thanks in advance,
> Regards,
> Ming
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-- 
Post Doctoral Researcher
School of Materials Science and Engineering
Georgia Institute of Technology