[gmx-users] Generating topology file containing HYP
m21.tang at qut.edu.au
Thu Apr 30 08:09:55 CEST 2015
Thanks for your help. I have downloaded and installed Discovery Studio Visualizer, and found only limited amount of its ability is available for free. Do you think I can convert proline into hydroxyproline using its free function?
Detail guidance will be appreciate.
Thanks in advance,
From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se [mailto:gromacs.org_gmx-users-bounces at maillist.sys.kth.se] On Behalf Of sang eun jee
Sent: Thursday, 30 April 2015 1:01 AM
To: gmx-users at gromacs.org
Subject: Re: [gmx-users] Generating topology file containing HYP
Dear Ming Tang
As long as I know, Discovery studio visualizer can do the mutation from proline to hydroxyproline in a simple way.
Hope it helps,
On Wed, Apr 29, 2015 at 5:42 AM, Ming Tang <m21.tang at qut.edu.au> wrote:
> Dear all,
> I have a pdb file, and need to convert some of the proline to
> hydroxyproline. Can I use pdb2gmx to convert proline to hydroxyproline
> when generating the topology file? If I cannot, then which kind of
> software can be used to convert proline to hydroxyproline when
> generating the topology file?
> Thanks in advance,
> Gromacs Users mailing list
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School of Materials Science and Engineering Georgia Institute of Technology
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