[gmx-users] Generating topology file containing HYP

[Ming Tang]

Dear, sangeun

Thanks for your help. I have downloaded and installed Discovery Studio Visualizer, and found only limited amount of its ability is available for free. Do you think I can convert proline into hydroxyproline using its free function?
Detail guidance will be appreciate.

Thanks in advance,
Best regards. 

-----Original Message-----
From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se [mailto:gromacs.org_gmx-users-bounces at maillist.sys.kth.se] On Behalf Of sang eun jee
Sent: Thursday, 30 April 2015 1:01 AM
To: gmx-users at gromacs.org
Subject: Re: [gmx-users] Generating topology file containing HYP

Dear Ming Tang

As long as I know, Discovery studio visualizer can do the mutation from proline to hydroxyproline in a simple way.

Hope it helps,

Sangeun Jee

On Wed, Apr 29, 2015 at 5:42 AM, Ming Tang <m21.tang at qut.edu.au> wrote:

> Dear all,
>
> I have a pdb file, and need to convert some of the proline to 
> hydroxyproline. Can I use pdb2gmx to convert proline to hydroxyproline 
> when generating the topology file?  If I cannot, then which kind of 
> software can be used to convert proline to hydroxyproline when 
> generating the topology file?
>
> Thanks in advance,
> Regards,
> Ming
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