[gmx-users] trajectory file

Timofey Tyugashev tyugashev at niboch.nsc.ru
Tue Dec 15 06:53:55 CET 2015

04.12.2015 14:43, gromacs.org_gmx-users-request at maillist.sys.kth.se пишет:
> I ran the production MD and got the trajectory file (xtcformat) but as I?m new to MD I don?t know how to visualize it. I opened it withvmd and it could read the atoms and frames but didn?t show anything when playingthe frames. I don?t know whether another program can do it or my xtc is notcorrect.
You can also read GROMACS trajectories with PyMOL. It offers quite nice 
visualisation options.
Use 'load' command to load the coordinate file first, then load the 
trajectory itself using 'load_traj' command.

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