[gmx-users] Errors "There were 2 inconsistent shifts. Check your topology" after I moved my peptide with VMD

[V.V.Chaban]

The easy way is to run an energy minimization.

'steep'
'cg'
'l_bfgs'


Perhaps, you will want to freeze some part of your system before to
avoid large displacements, if you care.






On Wed, Jul 15, 2015 at 7:29 AM, Vytautas Rakeviius
<vytautas1987 at yahoo.com> wrote:
> Hello,
> I used my charmm-gui.org built system on Gromacs for some time. Then I tried to adjust it little bit and moved my peptide with VMD to other place. I am not sure it is fine because I can get clashes and so on, but I tried it. I want to reuse same topology. Now try to minimize it again and get error:"There were 2 inconsistent shifts. Check your topology"Maybe there is easy way to fix this? Or I have to rebuild everything from 0?
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