[gmx-users] gromacs compilation in cygwin

[Mark Abraham]

Hi,

Libkernel is not a thing in 5.0.5, so you ate somehow getting interference
from an old install of gromacs. E.g. clean that out.

Mark

On Tue, 21 Jul 2015 09:45 Ayesha Fatima <ayeshafatima.69 at gmail.com> wrote:

> Dear All,
> I am trying to install gromacs 5.0.5 in cygwin. I am getting linking errors
> to fftw. although i have added the path in my bashrc file. can someone help
> .............
> the errors:
> ../libtool: line 6002: cd: home/ashmer/fftw-3.3.4/fftw-3.3.4/lib: No such
> file or directory
> libtool: link: cannot determine absolute directory name of
> `home/ashmer/fftw-3.3.4/fftw-3.3.4/lib'
> Makefile:308: recipe for target 'libkernel.la' failed
> make[5]: *** [libkernel.la] Error 1
> Makefile:548: recipe for target 'all-recursive' failed
> make[4]: *** [all-recursive] Error 1
> Makefile:416: recipe for target 'all' failed
> make[3]: *** [all] Error 2
> src/contrib/fftw/CMakeFiles/fftwBuild.dir/build.make:110: recipe for target
> 'src/contrib/fftw/fftwBuild-prefix/src/fftwBuild-stamp/fftwBuild-build'
> failed
> make[2]: ***
> [src/contrib/fftw/fftwBuild-prefix/src/fftwBuild-stamp/fftwBuild-build]
> Error 2
> CMakeFiles/Makefile2:1082: recipe for target
> 'src/contrib/fftw/CMakeFiles/fftwBuild.dir/all' failed
> make[1]: *** [src/contrib/fftw/CMakeFiles/fftwBuild.dir/all] Error 2
> Makefile:147: recipe for target 'all' failed
> make: *** [all] Error 2
> ...................
> in the bashrc file
>
> export PATH=$PATH:/home/ashmer/fftw-3.3.4/fftw-3.3.4
> export CPPFLAGS=-I$/home/ashmer/fftw-3.3.4/fftw-3.3.4/include
> export LDFLAGS=-L$/home/ashmer/fftw-3.3.4/fftw-3.3.4/lib
>
> export Gromacs5=/cygdrive/c
> export PATH=$Gromacs5/bin:$PATH
> export LD_LIBRARY_PATH=$Gromacs5/lib:$LD_LIBRARY_PATH
>
> ...........
> thank you
> Ayesha Fatima (UM)
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