[gmx-users] gromacs compilation in cygwin

Ayesha Fatima ayeshafatima.69 at gmail.com
Tue Jul 21 09:44:43 CEST 2015

Dear All,
I am trying to install gromacs 5.0.5 in cygwin. I am getting linking errors
to fftw. although i have added the path in my bashrc file. can someone help
the errors:
../libtool: line 6002: cd: home/ashmer/fftw-3.3.4/fftw-3.3.4/lib: No such
file or directory
libtool: link: cannot determine absolute directory name of
Makefile:308: recipe for target 'libkernel.la' failed
make[5]: *** [libkernel.la] Error 1
Makefile:548: recipe for target 'all-recursive' failed
make[4]: *** [all-recursive] Error 1
Makefile:416: recipe for target 'all' failed
make[3]: *** [all] Error 2
src/contrib/fftw/CMakeFiles/fftwBuild.dir/build.make:110: recipe for target
make[2]: ***
Error 2
CMakeFiles/Makefile2:1082: recipe for target
'src/contrib/fftw/CMakeFiles/fftwBuild.dir/all' failed
make[1]: *** [src/contrib/fftw/CMakeFiles/fftwBuild.dir/all] Error 2
Makefile:147: recipe for target 'all' failed
make: *** [all] Error 2
in the bashrc file

export PATH=$PATH:/home/ashmer/fftw-3.3.4/fftw-3.3.4
export CPPFLAGS=-I$/home/ashmer/fftw-3.3.4/fftw-3.3.4/include
export LDFLAGS=-L$/home/ashmer/fftw-3.3.4/fftw-3.3.4/lib

export Gromacs5=/cygdrive/c
export PATH=$Gromacs5/bin:$PATH

thank you
Ayesha Fatima (UM)

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