[gmx-users] translate problem

gromacs query gromacsquery at gmail.com
Mon Mar 2 12:46:09 CET 2015


Hi All,

I have membrane thickness along Z and want to merge peptide in membrane. I
need to translate peptide (say 10 Angs) along -Z to adjust its position and
used command like this:

editconf -f pep.pdb -c -princ -rotate 0 90 0 -translate -10 0 0 -o
new_pep.pdb

It seems that it does not move at all. But when I used '-translate -100000
0 0' then it moved a little along -Z. I am not sure whats wrong. Please
suggest. Also in VMD the center of pep does not pass through the principal
axis (slightly off center).

Thanks
regards,
JIom


More information about the gromacs.org_gmx-users mailing list