[gmx-users] MD on protein-RNA complex

[Justin Lemkul]

On 3/3/15 9:34 PM, Brett wrote:
> Dear Justin,
>
>
> I mean is any difficulty or special for gromacs to recognize the RNA in the PDB file?
>

Multi-chain and heterogeneous systems work out of the box.  As with anything, 
the force field has to support everything and the nomenclature has to match the 
force field's expectations, but pdb2gmx will take care of everything.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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