[gmx-users] oplsaa.ff parameters
Eric Smoll
ericsmoll at gmail.com
Thu Sep 10 23:04:12 CEST 2015
Hello GROMACS users,
oplsaa.ff/ffbonded.itp contains the following line:
CT CT CT CT 3 2.92880 -1.46440 0.20920 -1.67360
0.00000 0.00000 ; hydrocarbon all-atom
These values are at odds with those used provided in two publications
listed in "oplsaa.ff/forcefield.itp"
W. L. Jorgensen, D. S. Maxwell, and J. Tirado-Rives, J. Am. Chem. Soc. 118,
11225-11236 (1996).
R. C. Rizzo and W. L. Jorgensen, J. Am. Chem. Soc. 121, 4827-4836 (1999).
The fourier coefficients for "CT CT CT CT" (in kcal/mol) published in the
above references are:
V1 = +1.740
V2 = -0.157
V3 = +0.279
Using the conversion factors in the manual and a kcal-to-kJ conversion
factor of 4.184
C0 = F2 + 0.5*(F1 + F3)
C1 = 0.5*(-F1+3*F3)
C2 = -F2 + 4*F4
C3 = -2*F3
C4 = -4*F4
C5 = 0
This evaluates to:
CT CT CT CT 3 3.566860 -1.889076 0.656888
-2.334672 0.000000 0.000000
Is there a conversion factor I am missing?
Best,
Eric
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