September 2015 Archives by author

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Starting: Tue Sep 1 04:14:38 CEST 2015
Ending: Wed Sep 30 22:48:41 CEST 2015
Messages: 758

[gmx-users] interaction potential parameters Between H2O And CO2 hzj1000 at 163.com
[gmx-users] Error while using grompp Mark Abraham
[gmx-users] Heating step by step. Mark Abraham
[gmx-users] Testing gromacs on IBM POWER8 Mark Abraham
[gmx-users] Testing gromacs on IBM POWER8 Mark Abraham
[gmx-users] Blowing Up - intramolecular energy terms Mark Abraham
[gmx-users] User-Specified LJ Epsilon and Sigma Mark Abraham
[gmx-users] Cyclic peptide by using specbond.dat Mark Abraham
[gmx-users] struggles with cyclic peptides Mark Abraham
[gmx-users] Stampede multiple gpu nodes simulation Mark Abraham
[gmx-users] problem implementing REST2 in GROMACS 4.6.5 Mark Abraham
[gmx-users] GROMACS 5 paper, out now! Mark Abraham
[gmx-users] Lowering Torsional barrier for conformational sampling Mark Abraham
[gmx-users] Accelerating data analysis. Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] problem implementing REST2 in GROMACS 4.6.5 Mark Abraham
[gmx-users] gromacs-5.1 installation error Mark Abraham
[gmx-users] Problem in running CPMD with gmx-3.3.1 Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] GMX 5.0.6 on nodes with gpus Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] Choose index group from terminal input. Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] energygrps interactions are 0 for water Mark Abraham
[gmx-users] GPU suggestions Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] Efficiently running multiple simulations Mark Abraham
[gmx-users] REMD and distance restraints problem in gmx 4.6.7 Mark Abraham
[gmx-users] distance dependent energy Mark Abraham
[gmx-users] What's the practical effect of 'continuation = yes/no'? Mark Abraham
[gmx-users] To calculate temperture in a specific region Mark Abraham
[gmx-users] Prospective research areas of GROMACS Mark Abraham
[gmx-users] pressure and temperature coupling is off in vacuum simulations Mark Abraham
[gmx-users] To calculate temperture in a specific region Mark Abraham
[gmx-users] To calculate temperture in a specific region Mark Abraham
[gmx-users] pressure and temperature coupling is off in vacuum simulations Mark Abraham
[gmx-users] No domain decomposition Mark Abraham
[gmx-users] No domain decomposition Mark Abraham
[gmx-users] Load GROMACS trajectory with atom types and water in VMD Mark Abraham
[gmx-users] HREX simulation Mark Abraham
[gmx-users] HREX simulation Mark Abraham
[gmx-users] HREX simulation Mark Abraham
[gmx-users] gromacs 5.0.5 install Mark Abraham
[gmx-users] Optimize the cut-off distance and fourierspacing Mark Abraham
[gmx-users] Electric double layer, how to add charge Andreas
[gmx-users] Electric double layer, how to add charge Andreas
[gmx-users] Electric double layer, how to add charge Andreas
[gmx-users] adding walls? to EDL simulation? Andreas
[gmx-users] adding walls? to EDL simulation? Andreas
[gmx-users] Martini domain decomposition problem Gábor Balogh
[gmx-users] Using TIP4P(2005) with GROMOS-53a6 Pallavi Banerjee
[gmx-users] Using TIP4P(2005) with GROMOS-53a6 Pallavi Banerjee
[gmx-users] Using TIP4P(2005) with GROMOS-53a6 Pallavi Banerjee
[gmx-users] Atomic charges Pallavi Banerjee
[gmx-users] Atomic charges Pallavi Banerjee
[gmx-users] Atomic charges Pallavi Banerjee
[gmx-users] Solvating in a solvent other than water Pallavi Banerjee
[gmx-users] Solvating in a solvent other than water Pallavi Banerjee
[gmx-users] Solvating in a solvent other than water Pallavi Banerjee
[gmx-users] force fields selection Antonio Baptista
[gmx-users] How to create a spherocylindrical wall Barnett, James W
[gmx-users] GROMACS OPLS-AA question Barnett, James W
[gmx-users] oplsaa.ff parameters Barnett, James W
[gmx-users] Multi-atomic ion support for computational electrophysiology Barnett, James W
[gmx-users] hi Barnett, James W
[gmx-users] tabulated potential - problem Liz Bell
[gmx-users] tabulated potential - problem Liz Bell
[gmx-users] Blowing Up - intramolecular energy terms Liz Bell
[gmx-users] tabulated potential - problem Liz Bell
[gmx-users] tabulated potential - problem Liz Bell
[gmx-users] Rotation of the molecule Liz Bell
[gmx-users] K+ ions instead of NA+ for neutralization Andrew Bostick
[gmx-users] amber99bsc0 force field Andrew Bostick
[gmx-users] question Andrew Bostick
[gmx-users] question Andrew Bostick
[gmx-users] question Andrew Bostick
[gmx-users] Question: Fw:Re: Multiple membrane proteins in complex bilayer (martini) Brett
[gmx-users] Question: Fw:Re: Multiple membrane proteins in complex bilayer (martini) Brett
[gmx-users] membrane protein simulation Brett
[gmx-users] membrane protein simulation Brett
[gmx-users] membrane protein simulation Brett
[gmx-users] gromacs-5.1 installation error Brett
[gmx-users] on CHARMM-GUI produced lipid bilayer for gromacs use Brett
[gmx-users] Testing gromacs on IBM POWER8 Fabricio Cannini
[gmx-users] Testing gromacs on IBM POWER8 Fabricio Cannini
[gmx-users] gmx sasa output group not recognised Francesco Carbone
[gmx-users] gmx sasa output group not recognised Francesco Carbone
[gmx-users] gmx sasa output group not recognised Francesco Carbone
[gmx-users] trajectory file (xtc) visualization by VMD Francesco Carbone
[gmx-users] trajectory file (xtc) visualization by VMD Francesco Carbone
[gmx-users] Hybrid acceleration with "well-tempered parallel tempering metadynamics" Francesco Carbone
[gmx-users] Entropy calculations for simple systems (water) Miguel Caro
[gmx-users] Entropy calculations for simple systems (water) Miguel Caro
[gmx-users] Gromacs says that may GeForce 9800gt is incompatible any help? Juliano Braz Carregal
[gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 137 Juliano Braz Carregal
[gmx-users] Restart simulation after crash Juliano Braz Carregal
[gmx-users] Topology for ligands Juliano Braz Carregal
[gmx-users] Error on doing restart Juliano Braz Carregal
[gmx-users] Error on doing a restart Juliano Braz Carregal
[gmx-users] charge neutralization in vacuum simulations Vitaly V. Chaban
[gmx-users] Unusual Blow up Vitaly V. Chaban
[gmx-users] Green Kubo viscocity calculation Vitaly V. Chaban
[gmx-users] Green Kubo viscocity calculation Vitaly V. Chaban
[gmx-users] OPLS/AA parameters for 2-propanol Vitaly V. Chaban
[gmx-users] extend a simulation just with xtc file Vitaly V. Chaban
[gmx-users] NVE Vacuum Fluctuation of Energy Vitaly V. Chaban
[gmx-users] OPLS/AA parameters for 2-propanol Vitaly V. Chaban
[gmx-users] Force field selection for free Bicarbonate molecules in solution Vitaly V. Chaban
[gmx-users] Heating step by step. Vitaly V. Chaban
[gmx-users] topology parameters Vitaly V. Chaban
[gmx-users] g_angle and a dihedral Vitaly V. Chaban
[gmx-users] NVE+NVE: Two groups: one with Tcouple while the other one not Vitaly V. Chaban
[gmx-users] NVE+NVE: Two groups: one with Tcouple while the other one not Vitaly V. Chaban
[gmx-users] K+ ions instead of NA+ for neutralization Vitaly V. Chaban
[gmx-users] interaction potential parameters Between H2O And CO2 Vitaly V. Chaban
[gmx-users] interaction potential parameters Between H2O And CO2 Vitaly V. Chaban
[gmx-users] Solvating in a solvent other than water Vitaly V. Chaban
[gmx-users] simulating Cellulose using GAFF force field Vitaly V. Chaban
[gmx-users] CNT in water Vitaly V. Chaban
[gmx-users] Does .xtc enough for all kind of analysis? Chandan Choudhury
[gmx-users] Atomic charges Chandan Choudhury
[gmx-users] no domain decomposition Chandan Choudhury
[gmx-users] No domain decomposition Chandan Choudhury
[gmx-users] bond, angles and dihedrals in the topology file Chandan Choudhury
[gmx-users] naming of CH2 groups in pdb file Alex Cullen
[gmx-users] Cyclic peptide by using specbond.dat João M. Damas
[gmx-users] Using TIP4P(2005) with GROMOS-53a6 João M. Damas
[gmx-users] Pausing and resuming mdrun Andrew DeYoung
[gmx-users] Pausing and resuming mdrun Andrew DeYoung
[gmx-users] K+ ions instead of NA+ for neutralization Marcelo Depólo
[gmx-users] apparent shear rate vs. shear stress using cos_acceleration function in Gromacs Subas Dhakal
[gmx-users] (no subject) ANAND AMITKUMAR Dharia
[gmx-users] Clustering of Molecules Gromacs ANAND AMITKUMAR Dharia
[gmx-users] Atomic charges M.Cristina Donnamaria
[gmx-users] Atomic charges M.Cristina Donnamaria
[gmx-users] g_mmpbsa M.Cristina Donnamaria
[gmx-users] Converting Amber frcmod and mol2 files to Gromacs Simon Dürr
[gmx-users] Converting Amber frcmod and mol2 files to Gromacs Simon Dürr
[gmx-users] change the orientation of hydrogen atoms Stefania Evoli
[gmx-users] simulating Cellulose using GAFF force field Fahimeh
[gmx-users] Reliability about Lipid Order Parameters in GROMACS Rebeca García Fandiño
[gmx-users] Reliability about Lipid Order Parameters in GROMACS Rebeca García Fandiño
[gmx-users] Reliability about Lipid Order Parameters in GROMACS Rebeca García Fandiño
[gmx-users] g_covar error in Gromacs 5 Rebeca García Fandiño
[gmx-users] Force field selection for free Bicarbonate molecules in solution Faulkner, Matthew
[gmx-users] Force field selection for free Bicarbonate molecules in solution Faulkner, Matthew
[gmx-users] Force field selection for free Bicarbonate molecules in solution Faulkner, Matthew
[gmx-users] Force field selection for free Bicarbonate molecules in solution Faulkner, Matthew
[gmx-users] problem implementing REST2 in GROMACS 4.6.5 Elio Fiorentini
[gmx-users] problem implementing REST2 in GROMACS 4.6.5 Elio Fiorentini
[gmx-users] problem implementing REST2 in GROMACS 4.6.5 Elio Fiorentini
[gmx-users] Solvating in a solvent other than water Jarvist Moore Frost
[gmx-users] Carbohydrate GAG simulations Neha Gandhi
[gmx-users] extend a simulation just with xtc file Adriana Garro
[gmx-users] extend a simulation just with xtc file Adriana Garro
[gmx-users] Tcaf for viscosity calculation? Sunil Ghimire
[gmx-users] Fwd: Tcaf for viscosity calculation Sunil Ghimire
[gmx-users] User-Specified LJ Epsilon and Sigma Phwey Gil
[gmx-users] User-Specified LJ Epsilon and Sigma Phwey Gil
[gmx-users] User-Specified LJ Epsilon and Sigma Phwey Gil
[gmx-users] Creating a box of water with density 1000 g/l Phwey Gil
[gmx-users] miscelle formation using ligands only Phwey Gil
[gmx-users] addition of hydronium ion in simulation box Groenhof, Gerrit
[gmx-users] To calculate temperture of the specific molecules after simulation. Krishna Mohan Gupta
[gmx-users] To calculate temperture in a specific region Krishna Mohan Gupta
[gmx-users] To calculate temperture in a specific region Krishna Mohan Gupta
[gmx-users] To calculate temperture in a specific region Krishna Mohan Gupta
[gmx-users] To calculate temperture in a specific region Krishna Mohan Gupta
[gmx-users] MD with DNA double strand Amali Guruge
[gmx-users] PTR is not found in residue topology database Amali Guruge
[gmx-users] Atom OXT in PHE Amali Guruge
[gmx-users] Multiple membrane proteins in complex bilayer (martini) Kathrin Hadasch
[gmx-users] Binding energy calculation Malihe Hasanzadeh
[gmx-users] Binding energy calculation Malihe Hasanzadeh
[gmx-users] interaction potential parameters Between H2O And CO2 Zhongjin He
[gmx-users] interaction potential parameters Between H2O And CO2 Zhongjin He
[gmx-users] frequent stop of GPU jobs at specific simulation steps. Zhongjin He
[gmx-users] charge neutralization in vacuum simulations João Henriques
[gmx-users] vacuum simulations João Henriques
[gmx-users] Extracting Trajectory and False Simulation João Henriques
[gmx-users] Does .xtc enough for all kind of analysis? João Henriques
[gmx-users] Custom elastic network of a membrane protein Yasser Almeida Hernández
[gmx-users] mdp files Yasser Almeida Hernández
[gmx-users] Free energy perturbation with hamiltonian replica exchange (FEP - HEX) Julian
[gmx-users] Free energy perturbation with hamiltonian replica exchange (FEP - HEX) Julian
[gmx-users] Lowering Torsional barrier for conformational sampling Arjun Kalra
[gmx-users] gmx rdf gromacs 5.1 question! Stelios Karozis
[gmx-users] gmx rdf gromacs 5.1 question! Stelios Karozis
[gmx-users] gmx rdf gromacs 5.1 question! Stelios Karozis
[gmx-users] gmx rdf gromacs 5.1 question! Stelios Karozis
[gmx-users] gmx rdf gromacs 5.1 question! Stelios Karozis
[gmx-users] PMF calculation_ Constraint Sepideh Kavousi
[gmx-users] PMF calculation_ Constraint Sepideh Kavousi
[gmx-users] Atom OXT in PHE Sepideh Kavousi
[gmx-users] topology parameters Maryam Kowsar
[gmx-users] User-Specified LJ Epsilon and Sigma Maryam Kowsar
[gmx-users] User-Specified LJ Epsilon and Sigma Maryam Kowsar
[gmx-users] New atom definition Maryam Kowsar
[gmx-users] New atom definition Maryam Kowsar
[gmx-users] problem with gpu performance Peter Kroon
[gmx-users] problem with gpu performance Peter Kroon
[gmx-users] gromacs-5.1 with charmm36.ff Krzysztof Kuczera
[gmx-users] gromacs-5.1 with charmm36.ff Krzysztof Kuczera
[gmx-users] Accelerating data analysis. Krzysztof Kuczera
[gmx-users] Input files for performance analysis Kutzner, Carsten
[gmx-users] question about g_sas: dgSolv Justin Lemkul
[gmx-users] computation of energy for energygrps + problem using g_enemat Justin Lemkul
[gmx-users] Free energy calculation using inter-molecular bonded interaction Justin Lemkul
[gmx-users] extend a simulation just with xtc file Justin Lemkul
[gmx-users] No such moleculetype DPPE Justin Lemkul
[gmx-users] Analyze neighbors of a residue within a cutoff distance during simulation Justin Lemkul
[gmx-users] topology making by ATB/PRODRG Justin Lemkul
[gmx-users] structure changed after energy minimization Justin Lemkul
[gmx-users] computation of energy for energygrps + problem using g_enemat Justin Lemkul
[gmx-users] Unusual Blow up Justin Lemkul
[gmx-users] Free energy calculation using inter-molecular bonded interaction Justin Lemkul
[gmx-users] mdp file Justin Lemkul
[gmx-users] how to apply distance restrains between a residue and an ion Justin Lemkul
[gmx-users] how to apply distance restrains between a residue and an ion Justin Lemkul
[gmx-users] how to apply distance restrains between a residue and an ion Justin Lemkul
[gmx-users] Unusual Blow up Justin Lemkul
[gmx-users] trjconv -pbc nojump Justin Lemkul
[gmx-users] demux.pl input file Justin Lemkul
[gmx-users] Re : Unusual Blow up Justin Lemkul
[gmx-users] demux.pl input file Justin Lemkul
[gmx-users] trjconv -pbc nojump Justin Lemkul
[gmx-users] demux.pl input file Justin Lemkul
[gmx-users] Adding urea molecules to lysozyme simulation Justin Lemkul
[gmx-users] demux.pl input file Justin Lemkul
[gmx-users] trjconv -pbc nojump Justin Lemkul
[gmx-users] Free energy calculation using inter-molecular bonded interaction Justin Lemkul
[gmx-users] Re : Unusual Blow up Justin Lemkul
[gmx-users] OPLS/AA parameters for 2-propanol Justin Lemkul
[gmx-users] OPLS/AA parameters for 2-propanol Justin Lemkul
[gmx-users] HREX simulation Justin Lemkul
[gmx-users] CMAP missing for a new residue. Justin Lemkul
[gmx-users] Adding urea molecules to lysozyme simulation Justin Lemkul
[gmx-users] When is it necessary to use the -nopbc option in GROMACS analysis tools (i.e. g_sas)? Justin Lemkul
[gmx-users] No error but no of lipids are different in confout.gro and system_inflate.gro Justin Lemkul
[gmx-users] Free energy calculation using inter-molecular bonded interaction Justin Lemkul
[gmx-users] No default Ryckaert-Bell. types Justin Lemkul
[gmx-users] Reliability about Lipid Order Parameters in GROMACS Justin Lemkul
[gmx-users] Force field selection for free Bicarbonate molecules in solution Justin Lemkul
[gmx-users] Force field selection for free Bicarbonate molecules in solution Justin Lemkul
[gmx-users] problem with gpu performance Justin Lemkul
[gmx-users] Heating step by step. Justin Lemkul
[gmx-users] Invalid order for directive atomtypes- Justin Lemkul
[gmx-users] Invalid order for directive atomtypes- Justin Lemkul
[gmx-users] Invalid order for directive atomtypes- Justin Lemkul
[gmx-users] Heating step by step. Justin Lemkul
[gmx-users] bonds, angles, and dihedrals in .rtp file format Justin Lemkul
[gmx-users] Heating step by step. Justin Lemkul
[gmx-users] g_angle and a dihedral Justin Lemkul
[gmx-users] Extracting Trajectory and False Simulation Justin Lemkul
[gmx-users] xtc file from other software into Gromacs Justin Lemkul
[gmx-users] tabulated potential - problem Justin Lemkul
[gmx-users] tabulated potential - problem Justin Lemkul
[gmx-users] Fatal error pdb Justin Lemkul
[gmx-users] How to replay to previous answer or follow up the thread Justin Lemkul
[gmx-users] "Re: xtc file from other software into Gromacs" Justin Lemkul
[gmx-users] generate angle restraint and dihedral angle restraint file Justin Lemkul
[gmx-users] Charging free energies are unaffected by couple-intramol Justin Lemkul
[gmx-users] User-Specified LJ Epsilon and Sigma Justin Lemkul
[gmx-users] User-Specified LJ Epsilon and Sigma Justin Lemkul
[gmx-users] naming of CH2 groups in pdb file Justin Lemkul
[gmx-users] reaction field and permittivity Justin Lemkul
[gmx-users] g_order Justin Lemkul
[gmx-users] Creating a box of water with density 1000 g/l Justin Lemkul
[gmx-users] Creating a box of water with density 1000 g/l Justin Lemkul
[gmx-users] gromacs-5.1 with charmm36.ff Justin Lemkul
[gmx-users] g_order Justin Lemkul
[gmx-users] g_hbond Justin Lemkul
[gmx-users] Protein-ligand interaction calculation Justin Lemkul
[gmx-users] Creating a box of water with density 1000 g/l Justin Lemkul
[gmx-users] question Justin Lemkul
[gmx-users] miscelle formation using ligands only Justin Lemkul
[gmx-users] K+ ions instead of NA+ for neutralization Justin Lemkul
[gmx-users] Binding energy calculation Justin Lemkul
[gmx-users] miscelle formation using ligands only Justin Lemkul
[gmx-users] Binding energy calculation Justin Lemkul
[gmx-users] interaction potential parameters Between H2O And CO2 Justin Lemkul
[gmx-users] struggles with cyclic peptides Justin Lemkul
[gmx-users] 回复：Re: interaction potential parameters Between H2O And CO2 Justin Lemkul
[gmx-users] struggles with cyclic peptides Justin Lemkul
[gmx-users] hi Justin Lemkul
[gmx-users] struggles with cyclic peptides Justin Lemkul
[gmx-users] interaction potential parameters Between H2O And CO2 Justin Lemkul
[gmx-users] syntax for gmx distance Justin Lemkul
[gmx-users] grompp error Justin Lemkul
[gmx-users] amber99bsc0 force field Justin Lemkul
[gmx-users] syntax for gmx distance Justin Lemkul
[gmx-users] struggles with cyclic peptides Justin Lemkul
[gmx-users] syntax for gmx distance Justin Lemkul
[gmx-users] Using TIP4P(2005) with GROMOS-53a6 Justin Lemkul
[gmx-users] miscelle formation using ligands only Justin Lemkul
[gmx-users] Fixing periodicity effects on trajectory file Justin Lemkul
[gmx-users] Accelerating data analysis. Justin Lemkul
[gmx-users] how to install GROMOS 43a1p force field in gromacs 4.5.5 version Justin Lemkul
[gmx-users] miscelle formation using ligands only Justin Lemkul
[gmx-users] Fixing periodicity effects on trajectory file Justin Lemkul
[gmx-users] Atomic charges Justin Lemkul
[gmx-users] miscelle formation using ligands only Justin Lemkul
[gmx-users] gmx dipoles with dynamic indices (gromacs 5.0.x) Justin Lemkul
[gmx-users] Fixing periodicity effects on trajectory file Justin Lemkul
[gmx-users] H-bond calculation Justin Lemkul
[gmx-users] Problem with gmx-distance Justin Lemkul
[gmx-users] g_traj + g_analyze and core dumped error Justin Lemkul
[gmx-users] miscelle formation using ligands only Justin Lemkul
[gmx-users] MD with DNA double strand Justin Lemkul
[gmx-users] GPU-accelerated desktop PC for MD simulations Justin Lemkul
[gmx-users] New atom definition Justin Lemkul
[gmx-users] New atom definition Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Clustering of Molecules Gromacs Justin Lemkul
[gmx-users] Solvating in a solvent other than water Justin Lemkul
[gmx-users] Halothane rtp and pdb file Justin Lemkul
[gmx-users] trjcat Justin Lemkul
[gmx-users] Invalid order for directive atomtypes Justin Lemkul
[gmx-users] addition of hydronium ion in simulation box Justin Lemkul
[gmx-users] Gibbs free energy landscape Vs. the stability of protein structure Justin Lemkul
[gmx-users] Solvating in a solvent other than water Justin Lemkul
[gmx-users] Invalid order for directive atomtypes Justin Lemkul
[gmx-users] Invalid order for directive atomtypes Justin Lemkul
[gmx-users] addition of hydronium ion in simulation box Justin Lemkul
[gmx-users] force fields selection Justin Lemkul
[gmx-users] SDF problem Justin Lemkul
[gmx-users] Crystallographic Ions Justin Lemkul
[gmx-users] PMF calculation_ Constraint Justin Lemkul
[gmx-users] pressure and temperature coupling is off in vacuum simulations Justin Lemkul
[gmx-users] pressure and temperature coupling is off in vacuum simulations Justin Lemkul
[gmx-users] NPT with implicit solvent Justin Lemkul
[gmx-users] peptide lipid simulation Justin Lemkul
[gmx-users] COM motion removal Justin Lemkul
[gmx-users] PMF calculation_ Constraint Justin Lemkul
[gmx-users] No domain decomposition Justin Lemkul
[gmx-users] peptide lipid simulation Justin Lemkul
[gmx-users] peptide lipid simulation Justin Lemkul
[gmx-users] no domain decomposition Justin Lemkul
[gmx-users] PTR is not found in residue topology database Justin Lemkul
[gmx-users] GROMACS with AMBER heme parameters Justin Lemkul
[gmx-users] GROMACS with AMBER heme parameters Justin Lemkul
[gmx-users] GROMACS with AMBER heme parameters Justin Lemkul
[gmx-users] Gromacs says that may GeForce 9800gt is incompatible any, help? Justin Lemkul
[gmx-users] bonded forces in output Justin Lemkul
[gmx-users] Restart simulation after crash Justin Lemkul
[gmx-users] No domain decomposition Justin Lemkul
[gmx-users] question Justin Lemkul
[gmx-users] CNT in water Justin Lemkul
[gmx-users] question Justin Lemkul
[gmx-users] Fw: question about kalp15 simulation in dppc Justin Lemkul
[gmx-users] Fw: question about kalp15 in dppc justin tutorial Justin Lemkul
[gmx-users] Fw: problem with kalp in dppc simulation justin tutorial Justin Lemkul
[gmx-users] g_covar error in Gromacs 5 Justin Lemkul
[gmx-users] Free energy in octanol and water Justin Lemkul
[gmx-users] Barostat Selection Justin Lemkul
[gmx-users] Barostat Selection Justin Lemkul
[gmx-users] bond, angles and dihedrals in the topology file Justin Lemkul
[gmx-users] Free energy in octanol and water Justin Lemkul
[gmx-users] bond, angles and dihedrals in the topology file Justin Lemkul
[gmx-users] gmx distance lipid bilayer Justin Lemkul
[gmx-users] force fields selection James Lord
[gmx-users] force fields selection James Lord
[gmx-users] force fields selection James Lord
[gmx-users] charge neutralization in vacuum simulations Johnny Lu
[gmx-users] NVE Vacuum Fluctuation of Energy Johnny Lu
[gmx-users] Split Trajectory file into parts Johnny Lu
[gmx-users] OPLS/AA parameters for 2-propanol Johnny Lu
[gmx-users] OPLS/AA parameters for 2-propanol Johnny Lu
[gmx-users] extend a simulation just with xtc file Johnny Lu
[gmx-users] extend a simulation just with xtc file Johnny Lu
[gmx-users] extend a simulation just with xtc file Johnny Lu
[gmx-users] Gromacs-5.1 XLC Seg. Fault. Johnny Lu
[gmx-users] Error while using grompp Johnny Lu
[gmx-users] Vacuum versus Water Simulation Johnny Lu
[gmx-users] Vacuum versus Water Simulation Johnny Lu
[gmx-users] reaction field and permittivity Johnny Lu
[gmx-users] reaction field and permittivity Johnny Lu
[gmx-users] K+ ions instead of NA+ for neutralization Johnny Lu
[gmx-users] calculation of persistence length Johnny Lu
[gmx-users] calculating total percentage of time from gibbs free energy landscape Johnny Lu
[gmx-users] path sampling methods in gromacs ANTHONY C MANSON
[gmx-users] how to apply distance restrains between a residue and an ion Victor Ma
[gmx-users] how to apply distance restrains between a residue and an ion Victor Ma
[gmx-users] how to apply distance restrains between a residue and an ion Victor Ma
[gmx-users] how to apply distance restrains between a residue and an ion Victor Ma
[gmx-users] Multiple membrane proteins in complex bilayer (martini) Machtens, Jan-Philipp
[gmx-users] charge neutralization in vacuum simulations Erik Marklund
[gmx-users] RMSD comparison to a different reference structure. Erik Marklund
[gmx-users] vacuum simulation vs specific solvent simulation Erik Marklund
[gmx-users] Accelerating data analysis. Erik Marklund
[gmx-users] Accelerating data analysis. Erik Marklund
[gmx-users] H-bond calculation Erik Marklund
[gmx-users] distance dependent energy Erik Marklund
[gmx-users] pressure and temperature coupling is off in vacuum simulations Erik Marklund
[gmx-users] pressure and temperature coupling is off in vacuum simulations Erik Marklund
[gmx-users] pressure and temperature coupling is off in vacuum simulations Erik Marklund
[gmx-users] xtc file from other software into Gromacs Nikhil Maroli
[gmx-users] "Re: xtc file from other software into Gromacs" Nikhil Maroli
[gmx-users] How to replay to previous answer or follow up the thread Nikhil Maroli
[gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 49 Nikhil Maroli
[gmx-users] Cyclic peptide by using specbond.dat Nikhil Maroli
[gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 61 Nikhil Maroli
[gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees Repic Matej
[gmx-users] Gromacs says that may GeForce 9800gt is incompatible any help? Repic Matej
[gmx-users] mutating the protein Repic Matej
[gmx-users] gmx distance lipid bilayer Repic Matej
[gmx-users] HREX simulation Shyno Mathew
[gmx-users] HREX simulation Shyno Mathew
[gmx-users] HREX simulation Shyno Mathew
[gmx-users] OPLS/AA parameters for 2-propanol Ebert Maximilian
[gmx-users] OPLS/AA parameters for 2-propanol Ebert Maximilian
[gmx-users] OPLS/AA parameters for 2-propanol Ebert Maximilian
[gmx-users] OPLS/AA parameters for 2-propanol Ebert Maximilian
[gmx-users] OPLS/AA parameters for 2-propanol Ebert Maximilian
[gmx-users] Creating a box of water with density 1000 g/l Ebert Maximilian
[gmx-users] Creating a box of water with density 1000 g/l Ebert Maximilian
[gmx-users] Creating a box of water with density 1000 g/l Ebert Maximilian
[gmx-users] Load GROMACS trajectory with atom types and water in VMD Ebert Maximilian
[gmx-users] Load GROMACS trajectory with atom types and water in VMD Ebert Maximilian
[gmx-users] Free oxygen in water AMBER FF definition to use in GROMACS Ebert Maximilian
[gmx-users] GROMACS with AMBER heme parameters Ebert Maximilian
[gmx-users] GROMACS with AMBER heme parameters Ebert Maximilian
[gmx-users] GROMACS with AMBER heme parameters Ebert Maximilian
[gmx-users] GROMACS with AMBER heme parameters Ebert Maximilian
[gmx-users] GROMACS with AMBER heme parameters Ebert Maximilian
[gmx-users] Topology for ligands Ebert Maximilian
[gmx-users] Insert molecules in system with minimum distance between them Ebert Maximilian
[gmx-users] demux.pl input file Nawel Mele
[gmx-users] demux.pl input file Nawel Mele
[gmx-users] demux.pl input file Nawel Mele
[gmx-users] demux.pl input file Nawel Mele
[gmx-users] demux.pl input file Nawel Mele
[gmx-users] demux.pl input file Nawel Mele
[gmx-users] COM motion removal Parvez Mh
[gmx-users] energygrps interactions are 0 for water Julian Michalowsky
[gmx-users] Charging free energies are unaffected by couple-intramol Maksim Mišin
[gmx-users] Charging free energies are unaffected by couple-intramol Maksim Mišin
[gmx-users] NVE+NVE: Two groups: one with Tcouple while the other one not Guiyuan Mo
[gmx-users] Analyze neighbors of a residue within a cutoff distance during simulation Tushar Ranjan Moharana
[gmx-users] Does .xtc enough for all kind of analysis? Tushar Ranjan Moharana
[gmx-users] GPU-accelerated desktop PC for MD simulations Gustavo Avelar Molina
[gmx-users] Amber to GROMACS structure/topology Gustavo Avelar Molina
[gmx-users] How to create a spherocylindrical wall Jagannath Mondal
[gmx-users] Electric double layer, how to add charge André Farias de Moura
[gmx-users] Electric double layer, how to add charge André Farias de Moura
[gmx-users] addition of hydronium ion in simulation box André Farias de Moura
[gmx-users] addition of hydronium ion in simulation box André Farias de Moura
[gmx-users] backward.py script Juan Munoz-Garcia
[gmx-users] Analyze neighbors of a residue within a cutoff distance during simulation Teemu Murtola
[gmx-users] gmx sasa output group not recognised Teemu Murtola
[gmx-users] gmx sasa output group not recognised Teemu Murtola
[gmx-users] syntax for gmx distance Teemu Murtola
[gmx-users] Problem with gmx-distance Teemu Murtola
[gmx-users] gmx rdf gromacs 5.1 question! Teemu Murtola
[gmx-users] gmx rdf gromacs 5.1 question! Teemu Murtola
[gmx-users] Analysis of old xtc file using gromacs-5 tools Teemu Murtola
[gmx-users] Analysis of old xtc file using gromacs-5 tools Teemu Murtola
[gmx-users] Analysis of old xtc file using gromacs-5 tools Teemu Murtola
[gmx-users] Analysis of old xtc file using gromacs-5 tools Teemu Murtola
[gmx-users] calculating total percentage of time from gibbs free energy landscape Naba
[gmx-users] calculating total percentage of time from gibbs free energy landscape Naba
[gmx-users] Gibbs free energy landscape Vs. the stability of protein structure Naba
[gmx-users] Gibbs free energy landscape Vs. the stability of protein structure Naba
[gmx-users] Gibbs free energy landscape Vs. the stability of protein structure Naba
[gmx-users] Regarding gmx-user mailing list thread "Gibbs free energy landscape Vs. the stability of protein structure" Naba
[gmx-users] syntax for gmx distance Nash, Anthony
[gmx-users] syntax for gmx distance Nash, Anthony
[gmx-users] syntax for gmx distance Nash, Anthony
[gmx-users] syntax for gmx distance Nash, Anthony
[gmx-users] syntax for gmx distance Nash, Anthony
[gmx-users] syntax for gmx distance Nash, Anthony
[gmx-users] syntax for gmx distance Nash, Anthony
[gmx-users] g_hbond Shahid Nayeem
[gmx-users] g_hbond Shahid Nayeem
[gmx-users] REMD and distance restraints problem in gmx 4.6.7 Christopher Neale
[gmx-users] REMD and distance restraints problem in gmx 4.6.7 Christopher Neale
[gmx-users] distance dependent energy Cuong Nguyen
[gmx-users] g_order Stella Nickerson
[gmx-users] g_order Stella Nickerson
[gmx-users] struggles with cyclic peptides Nikhil
[gmx-users] struggles with cyclic peptides Nikhil
[gmx-users] struggles with cyclic peptides Nikhil
[gmx-users] struggles with cyclic peptides Nikhil
[gmx-users] Free energy calculation using inter-molecular bonded interaction Atsutoshi Okabe
[gmx-users] Free energy calculation using inter-molecular bonded interaction Atsutoshi Okabe
[gmx-users] Free energy calculation using inter-molecular bonded interaction Atsutoshi Okabe
[gmx-users] Free energy calculation using inter-molecular bonded interaction Atsutoshi Okabe
[gmx-users] Extracting Trajectory and False Simulation Rabindra Oliya
[gmx-users] Extracting Trajectory and False Simulation Rabindra Raj Oliya
[gmx-users] Extracting Trajectory and False Simulation Rabindra Raj Oliya
[gmx-users] GMX 5.0.6 on nodes with gpus Deva P.
[gmx-users] mdp file Sotirios Dionysios I. Papadatos
[gmx-users] mdp file Sotirios Dionysios I. Papadatos
[gmx-users] Adding urea molecules to lysozyme simulation Martin Nors Pedersen
[gmx-users] Adding urea molecules to lysozyme simulation Martin Nors Pedersen
[gmx-users] ambconv tool Atila Petrosian
[gmx-users] Invalid order for directive atomtypes- Atila Petrosian
[gmx-users] Invalid order for directive atomtypes- Atila Petrosian
[gmx-users] Invalid order for directive atomtypes- Atila Petrosian
[gmx-users] question Atila Petrosian
[gmx-users] generate angle restraint and dihedral angle restraint file Vy Phan
[gmx-users] generate angle restraint and dihedral angle restraint file Vy Phan
[gmx-users] Optimize the cut-off distance and fourierspacing Vy Phan
[gmx-users] Reliability about Lipid Order Parameters in GROMACS Thomas Piggot
[gmx-users] REMD system blowing up NISHA Prakash
[gmx-users] Running two separate mdrun instances on a single workstation Deva Priya
[gmx-users] miscelle formation using ligands only Chetan Puri
[gmx-users] miscelle formation using ligands only Chetan Puri
[gmx-users] miscelle formation using ligands only Chetan Puri
[gmx-users] miscelle formation using ligands only Chetan Puri
[gmx-users] miscelle formation using ligands only Chetan Puri
[gmx-users] miscelle formation using ligands only Chetan Puri
[gmx-users] maestro cms file to gromacs Chetan Puri
[gmx-users] GPU-accelerated desktop PC for MD simulations Szilárd Páll
[gmx-users] Running two separate mdrun instances on a single workstation Szilárd Páll
[gmx-users] Running two separate mdrun instances on a single workstation Szilárd Páll
[gmx-users] Pausing and resuming mdrun Szilárd Páll
[gmx-users] demux.pl input file Andrea Pérez-Villa
[gmx-users] Free energy in octanol and water Gmx QA
[gmx-users] Free energy in octanol and water Gmx QA
[gmx-users] H-bond calculation RJ
[gmx-users] Analysis of old xtc file using gromacs-5 tools Venkat Reddy
[gmx-users] Analysis of old xtc file using gromacs-5 tools Venkat Reddy
[gmx-users] Error in gromacs-5.1 installation Venkat Reddy
[gmx-users] Analysis of old xtc file using gromacs-5 tools Venkat Reddy
[gmx-users] Analysis of old xtc file using gromacs-5 tools Venkat Reddy
[gmx-users] distance between two index groups Reisser, Sabine (IPC)
[gmx-users] trjconv -pbc nojump Reisser, Sabine (IPC)
[gmx-users] trjconv -pbc nojump Reisser, Sabine (IPC)
[gmx-users] trjconv -pbc nojump Reisser, Sabine (IPC)
[gmx-users] trjconv -pbc nojump Reisser, Sabine (IPC)
[gmx-users] trjconv -pbc nojump Reisser, Sabine (IPC)
[gmx-users] distance between two index groups Sabine Reißer
[gmx-users] 1. peptide, lipid simulation (badamkhatan togoldor) Theoretical Research
[gmx-users] When is it necessary to use the -nopbc option in GROMACS analysis tools (i.e. g_sas)? Bernhard Reuter
[gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees GAYATHRI S
[gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees GAYATHRI S
[gmx-users] problem with gpu performance DEBASHIS SAHU
[gmx-users] problem with gpu performance DEBASHIS SAHU
[gmx-users] structure changed after energy minimization Sana Saeed
[gmx-users] ENVIRONMENT VARIABLES Sana Saeed
[gmx-users] -rdd and -ddcheck Sana Saeed
[gmx-users] NPT with implicit solvent Sana Saeed
[gmx-users] Input files for performance analysis Sabyasachi Sahoo
[gmx-users] Error while using grompp Sabyasachi Sahoo
[gmx-users] Error while using grompp Sabyasachi Sahoo
[gmx-users] Error while using grompp Sabyasachi Sahoo
[gmx-users] Input files for performance analysis Sabyasachi Sahoo
[gmx-users] Prospective research areas of GROMACS Sabyasachi Sahoo
[gmx-users] Prospective research areas of GROMACS Sabyasachi Sahoo
[gmx-users] Prospective research areas of GROMACS Sabyasachi Sahoo
[gmx-users] File input/output error Sabyasachi Sahoo
[gmx-users] unable to plot graph using xmgrace Raag Saluja
[gmx-users] mutating the protein Raag Saluja
[gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 154 Raag Saluja
[gmx-users] Problem in running CPMD with gmx-3.3.1 Padmani Sandhu
[gmx-users] addition of hydronium ion in simulation box Padmani Sandhu
[gmx-users] Gibbs free energy landscape Vs. the stability of protein structure Padmani Sandhu
[gmx-users] Gibbs free energy landscape Vs. the stability of protein structure Padmani Sandhu
[gmx-users] addition of hydronium ion in simulation box Padmani Sandhu
[gmx-users] addition of hydronium ion in simulation box Padmani Sandhu
[gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees Catarina A. Carvalheda dos Santos
[gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees Catarina A. Carvalheda dos Santos
[gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees Catarina A. Carvalheda dos Santos
[gmx-users] Using TIP4P(2005) with GROMOS-53a6 Catarina A. Carvalheda dos Santos
[gmx-users] addition of hydronium ion in simulation box Catarina A. Carvalheda dos Santos
[gmx-users] mutating the protein Catarina A. Carvalheda dos Santos
[gmx-users] Gromacs GPU got hang M Teguh Satria
[gmx-users] Gromacs GPU got hang M Teguh Satria
[gmx-users] Installation problem Parham Jabbarzadeh (Department of Biomedical Science)
[gmx-users] hi Idriz Seferi
[gmx-users] hi Idriz Seferi
[gmx-users] trjconv -pbc nojump Ganesh Shahane
[gmx-users] Fixing periodicity effects on trajectory file Michael Shirts
[gmx-users] HREX simulation Michael Shirts
[gmx-users] HREX simulation Michael Shirts
[gmx-users] HREX simulation Michael Shirts
[gmx-users] HREX simulation Michael Shirts
[gmx-users] Amber to GROMACS structure/topology Michael Shirts
[gmx-users] Amber to GROMACS structure/topology Michael Shirts
[gmx-users] HREX simulation Michael Shirts
[gmx-users] Converting Amber frcmod and mol2 files to Gromacs Michael Shirts
[gmx-users] accessing pressure components from trajectory file Aishwary Shivgan
[gmx-users] Green Kubo viscocity calculation Aishwary Shivgan
[gmx-users] accessing pressure components from trajectory file Aishwary Shivgan
[gmx-users] Green Kubo viscocity calculation Aishwary Shivgan
[gmx-users] No default Ryckaert-Bell. types Aishwary Shivgan
[gmx-users] structure changed after energy minimization Smith, Micholas D.
[gmx-users] Analyze neighbors of a residue within a cutoff distance during simulation Smith, Micholas D.
[gmx-users] structure changed after energy minimization Smith, Micholas D.
[gmx-users] Force field selection for free Bicarbonate molecules in solution Smith, Micholas D.
[gmx-users] Using TIP4P(2005) with GROMOS-53a6 Smith, Micholas D.
[gmx-users] maestro cms file to gromacs Smith, Micholas D.
[gmx-users] GROMACS OPLS-AA question Eric Smoll
[gmx-users] oplsaa.ff parameters Eric Smoll
[gmx-users] oplsaa.ff parameters Eric Smoll
[gmx-users] GPU suggestions Eric Smoll
[gmx-users] Unusual Blow up Nima Soltani
[gmx-users] Unusual Blow up Nima Soltani
[gmx-users] Unusual Blow up Nima Soltani
[gmx-users] Re : Unusual Blow up Nima Soltani
[gmx-users] Re : Unusual Blow up Nima Soltani
[gmx-users] Re : Unusual Blow up Nima Soltani
[gmx-users] Re : Unusual Blow up Nima Soltani
[gmx-users] Re : Unusual Blow up Nima Soltani
[gmx-users] about g_wham command of gromacs David van der Spoel
[gmx-users] Entropy calculations for simple systems (water) David van der Spoel
[gmx-users] Prospective research areas of GROMACS David van der Spoel
[gmx-users] Gibbs free energy landscape Vs. the stability of protein structure David van der Spoel
[gmx-users] Regarding gmx-user mailing list thread "Gibbs free energy landscape Vs. the stability of protein structure" David van der Spoel
[gmx-users] RMSD comparison to a different reference structure. Natalie Stephenson
[gmx-users] RMSD comparison to a different reference structure. Natalie Stephenson
[gmx-users] distance between two index groups Peter Stern
[gmx-users] Inconsistent shifts after switching form 4.5.7 to 5.0.4 version Mikhail Stukan
[gmx-users] Gromacs GPU got hang Téletchéa Stéphane
[gmx-users] Reliability about Lipid Order Parameters in GROMACS Piggot T.
[gmx-users] amber99bsc0 force field Piggot T.
[gmx-users] What's the practical effect of 'continuation = yes/no'? Trayder Thomas
[gmx-users] No default Ryckaert-Bell. types Naga Rajesh Tummala
[gmx-users] No default Ryckaert-Bell. types Naga Rajesh Tummala
[gmx-users] Problem with gmx-distance Timofey Tyugashev
[gmx-users] trjcat Ullmann, Thomas
[gmx-users] gmx dipoles with dynamic indices (gromacs 5.0.x) Daskalakis Vangelis
[gmx-users] gmx dipoles with dynamic indices (gromacs 5.0.x) Daskalakis Vangelis
[gmx-users] No default Ryckaert-Bell. types Daniele Veclani
[gmx-users] No default Ryckaert-Bell. types Daniele Veclani
[gmx-users] No default Ryckaert-Bell. types Daniele Veclani
[gmx-users] Invalid order for directive atomtypes Daniele Veclani
[gmx-users] Invalid order for directive atomtypes Daniele Veclani
[gmx-users] Invalid order for directive atomtypes Daniele Veclani
[gmx-users] SDF problem Daniele Veclani
[gmx-users] Metadynamics viewer Spiwok Vojtech
[gmx-users] GPU+CPU Parker de Waal
[gmx-users] Crystallographic Ions Parker de Waal
[gmx-users] maestro cms file to gromacs Parker de Waal
[gmx-users] swissparm .itp problems Parker de Waal
[gmx-users] Barostat Selection Parker de Waal
[gmx-users] Barostat Selection Parker de Waal
[gmx-users] accessing pressure components from trajectory file Tsjerk Wassenaar
[gmx-users] accessing pressure components from trajectory file Tsjerk Wassenaar
[gmx-users] When is it necessary to use the -nopbc option in GROMACS analysis tools (i.e. g_sas)? Tsjerk Wassenaar
[gmx-users] Extracting Trajectory and False Simulation Tsjerk Wassenaar
[gmx-users] membrane protein simulation Tsjerk Wassenaar
[gmx-users] membrane protein simulation Tsjerk Wassenaar
[gmx-users] membrane protein simulation Tsjerk Wassenaar
[gmx-users] on CHARMM-GUI produced lipid bilayer for gromacs use Tsjerk Wassenaar
[gmx-users] Fw:Re: on CHARMM-GUI produced lipid bilayer for gromacs use Tsjerk Wassenaar
[gmx-users] initial structure generation for performing MD simulations Tsjerk Wassenaar
[gmx-users] backward.py script Tsjerk Wassenaar
[gmx-users] No domain decomposition Tsjerk Wassenaar
[gmx-users] no domain decomposition Tsjerk Wassenaar
[gmx-users] Analysis of old xtc file using gromacs-5 tools Tsjerk Wassenaar
[gmx-users] Fatal error pdb Poncho Arvayo Zatarain
[gmx-users] Halothane rtp and pdb file Poncho Arvayo Zatarain
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] Efficiently running multiple simulations Zimmerman, Maxwell
[gmx-users] pressure and temperature coupling is off in vacuum simulations aghaei.arsalan
[gmx-users] No error but no of lipids are different in confout.gro and system_inflate.gro muhammad tahir ayub
[gmx-users] bonds, angles, and dihedrals in .rtp file format faride badalkhani
[gmx-users] grompp error faride badalkhani
[gmx-users] bond, angles and dihedrals in the topology file faride badalkhani
[gmx-users] bond, angles and dihedrals in the topology file faride badalkhani
[gmx-users] bond, angles and dihedrals in the topology file faride badalkhani
[gmx-users] bond, angles and dihedrals in the topology file faride badalkhani
[gmx-users] Fwd: Diffusion of protein neha bharti
[gmx-users] Excessive memory usage of mdrun mpignata at bidmc.harvard.edu
[gmx-users] how to install GROMOS 43a1p force field in gromacs 4.5.5 version rajan kumar choudhary
[gmx-users] CMAP missing for a new residue. Dawid das
[gmx-users] CMAP missing for a new residue. Dawid das
[gmx-users] CMAP missing for a new residue. Dawid das
[gmx-users] Heating step by step. Dawid das
[gmx-users] Heating step by step. Dawid das
[gmx-users] Heating step by step. Dawid das
[gmx-users] Heating step by step. Dawid das
[gmx-users] Heating step by step. Dawid das
[gmx-users] question Dawid das
[gmx-users] Accelerating data analysis. Dawid das
[gmx-users] Accelerating data analysis. Dawid das
[gmx-users] Accelerating data analysis. Dawid das
[gmx-users] Accelerating data analysis. Dawid das
[gmx-users] Accelerating data analysis. Dawid das
[gmx-users] Choose index group from terminal input. Dawid das
[gmx-users] Choose index group from terminal input. Dawid das
[gmx-users] Choose index group from terminal input. Dawid das
[gmx-users] g_traj + g_analyze and core dumped error gozde ergin
[gmx-users] g_traj + g_analyze and core dumped error gozde ergin
[gmx-users] g_traj + g_analyze and core dumped error gozde ergin
[gmx-users] Unwrapping of ssNA soumadwip ghosh
[gmx-users] Unwrapping of ssDNA soumadwip ghosh
[gmx-users] calculation of persistence length soumadwip ghosh
[gmx-users] initial structure generation for performing MD simulations soumadwip ghosh
[gmx-users] No domain decomposition soumadwip ghosh
[gmx-users] No domain decomposition soumadwip ghosh
[gmx-users] No domain decomposition soumadwip ghosh
[gmx-users] No domain decomposition soumadwip ghosh
[gmx-users] no domain decomposition soumadwip ghosh
[gmx-users] no domain decomposition soumadwip ghosh
[gmx-users] swissparm .itp problems soumadwip ghosh
[gmx-users] No domain decomposition soumadwip ghosh
[gmx-users] Stampede multiple gpu nodes simulation devapriyachem at gmail.com
[gmx-users] GMX 5.0.6 on nodes with gpus devapriyachem at gmail.com
[gmx-users] CNT in water maryam haji
[gmx-users] Problem with wall! mahi heyran
[gmx-users] Problem with wall! mahi heyran
[gmx-users] 回复：Re: interaction potential parameters Between H2O And CO2 hzj1000
[gmx-users] Multi-atomic ion support for computational electrophysiology mishtu at iitk.ac.in
[gmx-users] Stampede multiple gpu nodes simulation jia jia
[gmx-users] g_mmpbsa leila karami
[gmx-users] g_mmpbsa leila karami
[gmx-users] charge neutralization in vacuum simulations tasneem kausar
[gmx-users] vacuum simulations tasneem kausar
[gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 14 tasneem kausar
[gmx-users] vacuum simulation vs specific solvent simulation tasneem kausar
[gmx-users] pressure and temperature coupling is off in vacuum simulations tasneem kausar
[gmx-users] neighbour search problem with simulation restarts michal.kolar at marge.uochb.cas.cz
[gmx-users] Entropy calculations for simple systems (water) michal.kolar at marge.uochb.cas.cz
[gmx-users] topology parameters mah maz
[gmx-users] problem with gpu performance jagannath mondal
[gmx-users] problem with gpu performance jagannath mondal
[gmx-users] adding lipids mohammad r
[gmx-users] adding lipids mohammad r
[gmx-users] Carbohydrate GAG simulations Lara rajam
[gmx-users] Carbohydrate GAG simulations Lara rajam
[gmx-users] trajectory file (xtc) visualization by VMD Homa rooz
[gmx-users] Fixing periodicity effects on trajectory file Homa rooz
[gmx-users] Fixing periodicity effects on trajectory file Homa rooz
[gmx-users] Fixing periodicity effects on trajectory file Homa rooz
[gmx-users] topology making by ATB/PRODRG elham tazikeh
[gmx-users] g_mmpbsa time elham tazikeh
[gmx-users] trjcat elham tazikeh
[gmx-users] trjcat elham tazikeh
[gmx-users] peptide lipid simulation badamkhatan togoldor
[gmx-users] peptide, lipid simulation badamkhatan togoldor
[gmx-users] gmx distance lipid bilayer xy21hb
[gmx-users] gmx distance lipid bilayer xy21hb
[gmx-users] Fw: gmx distance lipid bilayer xy21hb
[gmx-users] gmx distance lipid bilayer xy21hb
[gmx-users] Protein-ligand interaction calculation michael zhenin
[gmx-users] bonded forces in output Stanislav Šimko
[gmx-users] Fw: question about kalp15 in dppc justin tutorial ‪neda razavi‬ ‪
[gmx-users] Fw: problem with kalp in dppc simulation justin tutorial ‪neda razavi‬ ‪
[gmx-users] Fw: question about kalp15 simulation in dppc ‪neda razavi‬ ‪
[gmx-users] (no subject) ‪neda razavi‬ ‪
[gmx-users] (no subject) ‪neda razavi‬ ‪
[gmx-users] about g_wham command of gromacs 凌未风
[gmx-users] Simulations of proteins in membrane bilayer 凌未风
[gmx-users] gromacs 5.0.5 install 신은혜

Last message date: Wed Sep 30 22:48:41 CEST 2015
Archived on: Wed Sep 30 22:48:42 CEST 2015

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