September 2015 Archives by thread

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Starting: Tue Sep 1 04:14:38 CEST 2015
Ending: Wed Sep 30 22:48:41 CEST 2015
Messages: 758

• [gmx-users] question about g_sas: dgSolv   Justin Lemkul
• [gmx-users] computation of energy for energygrps + problem using g_enemat   Justin Lemkul
• [gmx-users] Free energy calculation using inter-molecular bonded interaction   Justin Lemkul
  • [gmx-users] Free energy calculation using inter-molecular bonded interaction   Atsutoshi Okabe
    • [gmx-users] Free energy calculation using inter-molecular bonded interaction   Justin Lemkul
      • [gmx-users] Free energy calculation using inter-molecular bonded interaction   Atsutoshi Okabe
      • [gmx-users] Free energy calculation using inter-molecular bonded interaction   Justin Lemkul
      • [gmx-users] Free energy calculation using inter-molecular bonded interaction   Atsutoshi Okabe
      • [gmx-users] Free energy calculation using inter-molecular bonded interaction   Justin Lemkul
      • [gmx-users] Free energy calculation using inter-molecular bonded interaction   Atsutoshi Okabe
• [gmx-users] extend a simulation just with xtc file   Justin Lemkul
  • [gmx-users] extend a simulation just with xtc file   Adriana Garro
    • [gmx-users] extend a simulation just with xtc file   Johnny Lu
      • [gmx-users] extend a simulation just with xtc file   Johnny Lu
      • [gmx-users] extend a simulation just with xtc file   Johnny Lu
      • [gmx-users] extend a simulation just with xtc file   Adriana Garro
      • [gmx-users] extend a simulation just with xtc file   Vitaly V. Chaban
• [gmx-users] No such moleculetype DPPE   Justin Lemkul
• [gmx-users] structure changed after energy minimization   Sana Saeed
  • [gmx-users] structure changed after energy minimization   Smith, Micholas D.
    • [gmx-users] structure changed after energy minimization   Justin Lemkul
      • [gmx-users] structure changed after energy minimization   Smith, Micholas D.
• [gmx-users] topology making by ATB/PRODRG   elham tazikeh
  • [gmx-users] topology making by ATB/PRODRG   Justin Lemkul
• [gmx-users] Analyze neighbors of a residue within a cutoff distance during simulation   Tushar Ranjan Moharana
  • [gmx-users] Analyze neighbors of a residue within a cutoff distance during simulation   Justin Lemkul
    • [gmx-users] Analyze neighbors of a residue within a cutoff distance during simulation   Teemu Murtola
  • [gmx-users] Analyze neighbors of a residue within a cutoff distance during simulation   Smith, Micholas D.
• [gmx-users] ambconv tool   Atila Petrosian
• [gmx-users] charge neutralization in vacuum simulations   tasneem kausar
  • [gmx-users] charge neutralization in vacuum simulations   João Henriques
  • [gmx-users] charge neutralization in vacuum simulations   Erik Marklund
  • [gmx-users] charge neutralization in vacuum simulations   Vitaly V. Chaban
    • [gmx-users] charge neutralization in vacuum simulations   Johnny Lu
• [gmx-users] Unusual Blow up   Nima Soltani
  • [gmx-users] Unusual Blow up   Vitaly V. Chaban
  • [gmx-users] Unusual Blow up   Justin Lemkul
    • [gmx-users] Unusual Blow up   Nima Soltani
      • [gmx-users] Unusual Blow up   Justin Lemkul
      • [gmx-users] OPLS/AA parameters for 2-propanol   Ebert Maximilian
      • [gmx-users] OPLS/AA parameters for 2-propanol   Johnny Lu
      • [gmx-users] OPLS/AA parameters for 2-propanol   Johnny Lu
      • [gmx-users] OPLS/AA parameters for 2-propanol   Ebert Maximilian
      • [gmx-users] OPLS/AA parameters for 2-propanol   Vitaly V. Chaban
      • [gmx-users] OPLS/AA parameters for 2-propanol   Ebert Maximilian
      • [gmx-users] OPLS/AA parameters for 2-propanol   Vitaly V. Chaban
      • [gmx-users] OPLS/AA parameters for 2-propanol   Ebert Maximilian
      • [gmx-users] OPLS/AA parameters for 2-propanol   Justin Lemkul
      • [gmx-users] OPLS/AA parameters for 2-propanol   Ebert Maximilian
      • [gmx-users] OPLS/AA parameters for 2-propanol   Justin Lemkul
      • [gmx-users] Creating a box of water with density 1000 g/l   Ebert Maximilian
      • [gmx-users] Creating a box of water with density 1000 g/l   Justin Lemkul
      • [gmx-users] Creating a box of water with density 1000 g/l   Ebert Maximilian
      • [gmx-users] Creating a box of water with density 1000 g/l   Justin Lemkul
      • [gmx-users] Creating a box of water with density 1000 g/l   Phwey Gil
      • [gmx-users] Creating a box of water with density 1000 g/l   Ebert Maximilian
      • [gmx-users] Creating a box of water with density 1000 g/l   Justin Lemkul
    • [gmx-users] Unusual Blow up   Nima Soltani
• [gmx-users] distance between two index groups   Sabine Reißer
  • [gmx-users] distance between two index groups   Peter Stern
    • [gmx-users] distance between two index groups   Reisser, Sabine (IPC)
• [gmx-users] mdp file   Sotirios Dionysios I. Papadatos
  • [gmx-users] mdp file   Justin Lemkul
    • [gmx-users] mdp file   Sotirios Dionysios I. Papadatos
• [gmx-users] accessing pressure components from trajectory file   Aishwary Shivgan
  • [gmx-users] accessing pressure components from trajectory file   Tsjerk Wassenaar
    • [gmx-users] accessing pressure components from trajectory file   Aishwary Shivgan
      • [gmx-users] accessing pressure components from trajectory file   Tsjerk Wassenaar
• [gmx-users] Green Kubo viscocity calculation   Aishwary Shivgan
  • [gmx-users] Green Kubo viscocity calculation   Vitaly V. Chaban
    • [gmx-users] Green Kubo viscocity calculation   Aishwary Shivgan
      • [gmx-users] Green Kubo viscocity calculation   Vitaly V. Chaban
• [gmx-users] how to apply distance restrains between a residue and an ion   Victor Ma
  • [gmx-users] how to apply distance restrains between a residue and an ion   Victor Ma
  • [gmx-users] how to apply distance restrains between a residue and an ion   Justin Lemkul
    • [gmx-users] how to apply distance restrains between a residue and an ion   Victor Ma
      • [gmx-users] how to apply distance restrains between a residue and an ion   Justin Lemkul
      • [gmx-users] how to apply distance restrains between a residue and an ion   Victor Ma
      • [gmx-users] how to apply distance restrains between a residue and an ion   Justin Lemkul
• [gmx-users] about g_wham command of gromacs   凌未风
  • [gmx-users] about g_wham command of gromacs   David van der Spoel
• [gmx-users] computation of energy for energygrps + problem using g_enemat   Justin Lemkul
• [gmx-users] NVE Vacuum Fluctuation of Energy   Johnny Lu
  • [gmx-users] NVE Vacuum Fluctuation of Energy   Vitaly V. Chaban
• [gmx-users] Re : Unusual Blow up   Nima Soltani
  • [gmx-users] Re : Unusual Blow up   Nima Soltani
    • [gmx-users] Re : Unusual Blow up   Justin Lemkul
      • [gmx-users] Re : Unusual Blow up   Nima Soltani
      • [gmx-users] Re : Unusual Blow up   Nima Soltani
      • [gmx-users] Re : Unusual Blow up   Justin Lemkul
      • [gmx-users] Re : Unusual Blow up   Nima Soltani
• [gmx-users] Tcaf for viscosity calculation?   Sunil Ghimire
• [gmx-users] Split Trajectory file into parts   Johnny Lu
• [gmx-users] Gromacs-5.1 XLC Seg. Fault.   Johnny Lu
• [gmx-users] trjconv -pbc nojump   Reisser, Sabine (IPC)
  • [gmx-users] trjconv -pbc nojump   Ganesh Shahane
    • [gmx-users] trjconv -pbc nojump   Reisser, Sabine (IPC)
      • [gmx-users] trjconv -pbc nojump   Justin Lemkul
      • [gmx-users] trjconv -pbc nojump   Reisser, Sabine (IPC)
      • [gmx-users] trjconv -pbc nojump   Justin Lemkul
      • [gmx-users] trjconv -pbc nojump   Reisser, Sabine (IPC)
      • [gmx-users] trjconv -pbc nojump   Justin Lemkul
      • [gmx-users] trjconv -pbc nojump   Reisser, Sabine (IPC)
• [gmx-users] vacuum simulations   tasneem kausar
  • [gmx-users] vacuum simulations   João Henriques
• [gmx-users] demux.pl input file   Nawel Mele
  • [gmx-users] demux.pl input file   Andrea Pérez-Villa
    • [gmx-users] demux.pl input file   Nawel Mele
      • [gmx-users] demux.pl input file   Justin Lemkul
      • [gmx-users] demux.pl input file   Nawel Mele
      • [gmx-users] demux.pl input file   Justin Lemkul
      • [gmx-users] demux.pl input file   Nawel Mele
      • [gmx-users] demux.pl input file   Justin Lemkul
      • [gmx-users] demux.pl input file   Nawel Mele
      • [gmx-users] demux.pl input file   Justin Lemkul
      • [gmx-users] demux.pl input file   Nawel Mele
• [gmx-users] Unwrapping of ssNA   soumadwip ghosh
• [gmx-users] Fwd: Tcaf for viscosity calculation   Sunil Ghimire
• [gmx-users] No default Ryckaert-Bell. types   Daniele Veclani
  • [gmx-users] No default Ryckaert-Bell. types   Naga Rajesh Tummala
    • [gmx-users] No default Ryckaert-Bell. types   Daniele Veclani
      • [gmx-users] No default Ryckaert-Bell. types   Naga Rajesh Tummala
      • [gmx-users] No default Ryckaert-Bell. types   Daniele Veclani
      • [gmx-users] No default Ryckaert-Bell. types   Justin Lemkul
      • [gmx-users] No default Ryckaert-Bell. types   Aishwary Shivgan
• [gmx-users] Inconsistent shifts after switching form 4.5.7 to 5.0.4 version   Mikhail Stukan
• [gmx-users] Testing gromacs on IBM POWER8   Fabricio Cannini
  • [gmx-users] Testing gromacs on IBM POWER8   Mark Abraham
• [gmx-users] Testing gromacs on IBM POWER8   Fabricio Cannini
  • [gmx-users] Testing gromacs on IBM POWER8   Mark Abraham
• [gmx-users] Adding urea molecules to lysozyme simulation   Martin Nors Pedersen
  • [gmx-users] Adding urea molecules to lysozyme simulation   Justin Lemkul
• [gmx-users] HREX simulation   Shyno Mathew
  • [gmx-users] HREX simulation   Justin Lemkul
  • [gmx-users] HREX simulation   Shyno Mathew
    • [gmx-users] Load GROMACS trajectory with atom types and water in VMD   Ebert Maximilian
      • [gmx-users] Load GROMACS trajectory with atom types and water in VMD   Mark Abraham
      • [gmx-users] Load GROMACS trajectory with atom types and water in VMD   Ebert Maximilian
      • [gmx-users] Free oxygen in water AMBER FF definition to use in GROMACS   Ebert Maximilian
    • [gmx-users] HREX simulation   Michael Shirts
      • [gmx-users] HREX simulation   Mark Abraham
      • [gmx-users] HREX simulation   Michael Shirts
      • [gmx-users] HREX simulation   Michael Shirts
      • [gmx-users] HREX simulation   Mark Abraham
      • [gmx-users] HREX simulation   Michael Shirts
      • [gmx-users] HREX simulation   Mark Abraham
      • [gmx-users] HREX simulation   Michael Shirts
    • [gmx-users] HREX simulation   Shyno Mathew
• [gmx-users] Unwrapping of ssDNA   soumadwip ghosh
• [gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 14   tasneem kausar
• [gmx-users] CMAP missing for a new residue.   Dawid das
  • [gmx-users] CMAP missing for a new residue.   Justin Lemkul
    • [gmx-users] CMAP missing for a new residue.   Dawid das
      • [gmx-users] CMAP missing for a new residue.   Dawid das
• [gmx-users] Adding urea molecules to lysozyme simulation   Martin Nors Pedersen
  • [gmx-users] Adding urea molecules to lysozyme simulation   Justin Lemkul
• [gmx-users] When is it necessary to use the -nopbc option in GROMACS analysis tools (i.e. g_sas)?   Bernhard Reuter
  • [gmx-users] When is it necessary to use the -nopbc option in GROMACS analysis tools (i.e. g_sas)?   Justin Lemkul
    • [gmx-users] When is it necessary to use the -nopbc option in GROMACS analysis tools (i.e. g_sas)?   Tsjerk Wassenaar
• [gmx-users] Input files for performance analysis   Sabyasachi Sahoo
  • [gmx-users] Input files for performance analysis   Kutzner, Carsten
    • [gmx-users] Input files for performance analysis   Sabyasachi Sahoo
• [gmx-users] No error but no of lipids are different in confout.gro and system_inflate.gro   muhammad tahir ayub
  • [gmx-users] No error but no of lipids are different in confout.gro and system_inflate.gro   Justin Lemkul
• [gmx-users] path sampling methods in gromacs   ANTHONY C MANSON
• [gmx-users] Error while using grompp   Sabyasachi Sahoo
  • [gmx-users] Error while using grompp   Mark Abraham
    • [gmx-users] Error while using grompp   Sabyasachi Sahoo
      • [gmx-users] Error while using grompp   Johnny Lu
      • [gmx-users] Error while using grompp   Sabyasachi Sahoo
• [gmx-users] Reliability about Lipid Order Parameters in GROMACS   Rebeca García Fandiño
  • [gmx-users] Reliability about Lipid Order Parameters in GROMACS   Justin Lemkul
    • [gmx-users] Reliability about Lipid Order Parameters in GROMACS   Thomas Piggot
      • [gmx-users] Reliability about Lipid Order Parameters in GROMACS   Rebeca García Fandiño
      • [gmx-users] Reliability about Lipid Order Parameters in GROMACS   Piggot T.
    • [gmx-users] Reliability about Lipid Order Parameters in GROMACS   Rebeca García Fandiño
• [gmx-users] Carbohydrate GAG simulations   Lara rajam
  • [gmx-users] Carbohydrate GAG simulations   Neha Gandhi
    • [gmx-users] Carbohydrate GAG simulations   Lara rajam
• [gmx-users] gmx sasa output group not recognised   Francesco Carbone
  • [gmx-users] gmx sasa output group not recognised   Teemu Murtola
    • [gmx-users] gmx sasa output group not recognised   Francesco Carbone
      • [gmx-users] gmx sasa output group not recognised   Teemu Murtola
    • [gmx-users] gmx sasa output group not recognised   Francesco Carbone
• [gmx-users] Force field selection for free Bicarbonate molecules in solution   Faulkner, Matthew
  • [gmx-users] Force field selection for free Bicarbonate molecules in solution   Smith, Micholas D.
  • [gmx-users] Force field selection for free Bicarbonate molecules in solution   Justin Lemkul
    • [gmx-users] Force field selection for free Bicarbonate molecules in solution   Faulkner, Matthew
      • [gmx-users] Force field selection for free Bicarbonate molecules in solution   Justin Lemkul
      • [gmx-users] Force field selection for free Bicarbonate molecules in solution   Faulkner, Matthew
  • [gmx-users] Force field selection for free Bicarbonate molecules in solution   Vitaly V. Chaban
• [gmx-users] neighbour search problem with simulation restarts   michal.kolar at marge.uochb.cas.cz
• [gmx-users] Force field selection for free Bicarbonate molecules in solution   Faulkner, Matthew
• [gmx-users] problem with gpu performance   jagannath mondal
  • [gmx-users] problem with gpu performance   DEBASHIS SAHU
  • [gmx-users] problem with gpu performance   Peter Kroon
    • [gmx-users] problem with gpu performance   jagannath mondal
      • [gmx-users] problem with gpu performance   Peter Kroon
      • [gmx-users] problem with gpu performance   Justin Lemkul
• [gmx-users] Entropy calculations for simple systems (water)   Miguel Caro
  • [gmx-users] Entropy calculations for simple systems (water)   michal.kolar at marge.uochb.cas.cz
    • [gmx-users] Entropy calculations for simple systems (water)   Miguel Caro
      • [gmx-users] Entropy calculations for simple systems (water)   David van der Spoel
• [gmx-users] Heating step by step.   Dawid das
  • [gmx-users] Heating step by step.   Justin Lemkul
  • [gmx-users] Heating step by step.   Vitaly V. Chaban
    • [gmx-users] Heating step by step.   Dawid das
      • [gmx-users] Heating step by step.   Dawid das
      • [gmx-users] Heating step by step.   Mark Abraham
      • [gmx-users] Heating step by step.   Justin Lemkul
      • [gmx-users] Heating step by step.   Dawid das
      • [gmx-users] Heating step by step.   Justin Lemkul
      • [gmx-users] Heating step by step.   Dawid das
• [gmx-users] Invalid order for directive atomtypes-   Atila Petrosian
  • [gmx-users] Invalid order for directive atomtypes-   Justin Lemkul
  • [gmx-users] Invalid order for directive atomtypes-   Atila Petrosian
    • [gmx-users] Invalid order for directive atomtypes-   Justin Lemkul
    • [gmx-users] Invalid order for directive atomtypes-   Atila Petrosian
      • [gmx-users] Invalid order for directive atomtypes-   Justin Lemkul
• [gmx-users] bonds, angles, and dihedrals in .rtp file format   faride badalkhani
  • [gmx-users] bonds, angles, and dihedrals in .rtp file format   Justin Lemkul
• [gmx-users] topology parameters   mah maz
  • [gmx-users] topology parameters   Vitaly V. Chaban
    • [gmx-users] topology parameters   Maryam Kowsar
• [gmx-users] g_angle and a dihedral   Vitaly V. Chaban
  • [gmx-users] g_angle and a dihedral   Justin Lemkul
• [gmx-users] Extracting Trajectory and False Simulation   Rabindra Oliya
  • [gmx-users] Extracting Trajectory and False Simulation   Justin Lemkul
• [gmx-users] vacuum simulation vs specific solvent simulation   tasneem kausar
  • [gmx-users] vacuum simulation vs specific solvent simulation   Erik Marklund
• [gmx-users] Extracting Trajectory and False Simulation   Rabindra Raj Oliya
  • [gmx-users] Extracting Trajectory and False Simulation   Tsjerk Wassenaar
• [gmx-users] Extracting Trajectory and False Simulation   Rabindra Raj Oliya
  • [gmx-users] Extracting Trajectory and False Simulation   João Henriques
• [gmx-users] RMSD comparison to a different reference structure.   Natalie Stephenson
  • [gmx-users] RMSD comparison to a different reference structure.   Erik Marklund
    • [gmx-users] RMSD comparison to a different reference structure.   Natalie Stephenson
• [gmx-users] unable to plot graph using xmgrace   Raag Saluja
• [gmx-users] xtc file from other software into Gromacs   Nikhil Maroli
  • [gmx-users] xtc file from other software into Gromacs   Justin Lemkul
• [gmx-users] tabulated potential - problem   Liz Bell
  • [gmx-users] tabulated potential - problem   Liz Bell
  • [gmx-users] tabulated potential - problem   Justin Lemkul
    • [gmx-users] tabulated potential - problem   Liz Bell
      • [gmx-users] tabulated potential - problem   Justin Lemkul
      • [gmx-users] tabulated potential - problem   Liz Bell
• [gmx-users] Blowing Up - intramolecular energy terms   Liz Bell
  • [gmx-users] Blowing Up - intramolecular energy terms   Mark Abraham
  • [gmx-users] Rotation of the molecule   Liz Bell
• [gmx-users] Fatal error pdb   Poncho Arvayo Zatarain
  • [gmx-users] Fatal error pdb   Justin Lemkul
• [gmx-users] Vacuum versus Water Simulation   Johnny Lu
  • [gmx-users] Vacuum versus Water Simulation   Johnny Lu
• [gmx-users] "Re: xtc file from other software into Gromacs"   Nikhil Maroli
  • [gmx-users] "Re: xtc file from other software into Gromacs"   Justin Lemkul
• [gmx-users] How to replay to previous answer or follow up the thread   Nikhil Maroli
  • [gmx-users] How to replay to previous answer or follow up the thread   Justin Lemkul
• [gmx-users] generate angle restraint and dihedral angle restraint file   Vy Phan
  • [gmx-users] generate angle restraint and dihedral angle restraint file   Justin Lemkul
    • [gmx-users] generate angle restraint and dihedral angle restraint file   Vy Phan
• [gmx-users] Charging free energies are unaffected by couple-intramol   Maksim Mišin
  • [gmx-users] Charging free energies are unaffected by couple-intramol   Justin Lemkul
  • [gmx-users] Charging free energies are unaffected by couple-intramol   Maksim Mišin
• [gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 49   Nikhil Maroli
• [gmx-users] User-Specified LJ Epsilon and Sigma   Phwey Gil
  • [gmx-users] User-Specified LJ Epsilon and Sigma   Justin Lemkul
  • [gmx-users] User-Specified LJ Epsilon and Sigma   Maryam Kowsar
    • [gmx-users] User-Specified LJ Epsilon and Sigma   Justin Lemkul
      • [gmx-users] User-Specified LJ Epsilon and Sigma   Maryam Kowsar
      • [gmx-users] User-Specified LJ Epsilon and Sigma   Phwey Gil
      • [gmx-users] User-Specified LJ Epsilon and Sigma   Mark Abraham
      • [gmx-users] User-Specified LJ Epsilon and Sigma   Phwey Gil
• [gmx-users] Multiple membrane proteins in complex bilayer (martini)   Kathrin Hadasch
• [gmx-users] g_hbond   Shahid Nayeem
• [gmx-users] Does .xtc enough for all kind of analysis?   Tushar Ranjan Moharana
  • [gmx-users] Does .xtc enough for all kind of analysis?   Chandan Choudhury
  • [gmx-users] Does .xtc enough for all kind of analysis?   João Henriques
• [gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees   GAYATHRI S
  • [gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees   Catarina A. Carvalheda dos Santos
    • [gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees   GAYATHRI S
      • [gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees   Catarina A. Carvalheda dos Santos
  • [gmx-users] get dihedrals in 0 to 360 degrees instead of -180 to +180 degrees   Repic Matej
• [gmx-users] Multiple membrane proteins in complex bilayer (martini)   Machtens, Jan-Philipp
• [gmx-users] naming of CH2 groups in pdb file   Alex Cullen
  • [gmx-users] naming of CH2 groups in pdb file   Justin Lemkul
• [gmx-users] adding lipids   mohammad r
• [gmx-users] adding lipids   mohammad r
• [gmx-users] trajectory file (xtc) visualization by VMD   Homa rooz
  • [gmx-users] trajectory file (xtc) visualization by VMD   Francesco Carbone
• [gmx-users] GROMACS OPLS-AA question   Eric Smoll
  • [gmx-users] GROMACS OPLS-AA question   Barnett, James W
• [gmx-users] g_order   Stella Nickerson
  • [gmx-users] g_order   Justin Lemkul
    • [gmx-users] g_order   Stella Nickerson
      • [gmx-users] g_order   Justin Lemkul
• [gmx-users] reaction field and permittivity   Johnny Lu
  • [gmx-users] reaction field and permittivity   Justin Lemkul
    • [gmx-users] reaction field and permittivity   Johnny Lu
• [gmx-users] oplsaa.ff parameters   Eric Smoll
  • [gmx-users] oplsaa.ff parameters   Barnett, James W
    • [gmx-users] oplsaa.ff parameters   Eric Smoll
• [gmx-users] gromacs-5.1 with charmm36.ff   Krzysztof Kuczera
  • [gmx-users] gromacs-5.1 with charmm36.ff   Justin Lemkul
    • [gmx-users] gromacs-5.1 with charmm36.ff   Krzysztof Kuczera
• [gmx-users] NVE+NVE: Two groups: one with Tcouple while the other one not   Guiyuan Mo
  • [gmx-users] NVE+NVE: Two groups: one with Tcouple while the other one not   Vitaly V. Chaban
• [gmx-users] NVE+NVE: Two groups: one with Tcouple while the other one not   Vitaly V. Chaban
• [gmx-users] How to create a spherocylindrical wall   Jagannath Mondal
  • [gmx-users] How to create a spherocylindrical wall   Barnett, James W
• [gmx-users] g_hbond   Shahid Nayeem
  • [gmx-users] g_hbond   Justin Lemkul
• [gmx-users] calculating total percentage of time from gibbs free energy landscape   Naba
  • [gmx-users] calculating total percentage of time from gibbs free energy landscape   Johnny Lu
• [gmx-users] Protein-ligand interaction calculation   michael zhenin
  • [gmx-users] Protein-ligand interaction calculation   Justin Lemkul
• [gmx-users] Cyclic peptide by using specbond.dat   Nikhil Maroli
  • [gmx-users] Cyclic peptide by using specbond.dat   João M. Damas
    • [gmx-users] Cyclic peptide by using specbond.dat   Mark Abraham
• [gmx-users] miscelle formation using ligands only   Chetan Puri
  • [gmx-users] miscelle formation using ligands only   Justin Lemkul
    • [gmx-users] miscelle formation using ligands only   Chetan Puri
      • [gmx-users] miscelle formation using ligands only   Justin Lemkul
      • [gmx-users] miscelle formation using ligands only   Chetan Puri
      • [gmx-users] miscelle formation using ligands only   Phwey Gil
      • [gmx-users] miscelle formation using ligands only   Justin Lemkul
      • [gmx-users] miscelle formation using ligands only   Chetan Puri
      • [gmx-users] miscelle formation using ligands only   Justin Lemkul
      • [gmx-users] miscelle formation using ligands only   Chetan Puri
      • [gmx-users] miscelle formation using ligands only   Justin Lemkul
      • [gmx-users] miscelle formation using ligands only   Chetan Puri
      • [gmx-users] miscelle formation using ligands only   Justin Lemkul
• [gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 61   Nikhil Maroli
  • [gmx-users] struggles with cyclic peptides   Mark Abraham
    • [gmx-users] struggles with cyclic peptides   Nikhil
      • [gmx-users] struggles with cyclic peptides   Justin Lemkul
      • [gmx-users] struggles with cyclic peptides   Nikhil
      • [gmx-users] struggles with cyclic peptides   Justin Lemkul
      • [gmx-users] struggles with cyclic peptides   Nikhil
      • [gmx-users] struggles with cyclic peptides   Justin Lemkul
      • [gmx-users] struggles with cyclic peptides   Nikhil
      • [gmx-users] struggles with cyclic peptides   Justin Lemkul
• [gmx-users] calculation of persistence length   soumadwip ghosh
  • [gmx-users] calculation of persistence length   Johnny Lu
• [gmx-users] Metadynamics viewer   Spiwok Vojtech
• [gmx-users] Question: Fw:Re: Multiple membrane proteins in complex bilayer (martini)   Brett
• [gmx-users] Question: Fw:Re: Multiple membrane proteins in complex bilayer (martini)   Brett
• [gmx-users] Multi-atomic ion support for computational electrophysiology   mishtu at iitk.ac.in
  • [gmx-users] Multi-atomic ion support for computational electrophysiology   Barnett, James W
• [gmx-users] question   Atila Petrosian
  • [gmx-users] question   Dawid das
  • [gmx-users] question   Justin Lemkul
• [gmx-users] Stampede multiple gpu nodes simulation   devapriyachem at gmail.com
  • [gmx-users] Stampede multiple gpu nodes simulation   Mark Abraham
  • [gmx-users] Stampede multiple gpu nodes simulation   jia jia
• [gmx-users] membrane protein simulation   Brett
  • [gmx-users] membrane protein simulation   Tsjerk Wassenaar
    • [gmx-users] membrane protein simulation   Brett
      • [gmx-users] membrane protein simulation   Tsjerk Wassenaar
      • [gmx-users] membrane protein simulation   Brett
      • [gmx-users] membrane protein simulation   Tsjerk Wassenaar
• [gmx-users] K+ ions instead of NA+ for neutralization   Andrew Bostick
  • [gmx-users] K+ ions instead of NA+ for neutralization   Johnny Lu
    • [gmx-users] K+ ions instead of NA+ for neutralization   Justin Lemkul
  • [gmx-users] K+ ions instead of NA+ for neutralization   Vitaly V. Chaban
    • [gmx-users] K+ ions instead of NA+ for neutralization   Marcelo Depólo
• [gmx-users] Binding energy calculation   Malihe Hasanzadeh
  • [gmx-users] Binding energy calculation   Justin Lemkul
    • [gmx-users] Binding energy calculation   Malihe Hasanzadeh
      • [gmx-users] Binding energy calculation   Justin Lemkul
• [gmx-users] interaction potential parameters Between H2O And CO2   Zhongjin He
  • [gmx-users] interaction potential parameters Between H2O And CO2   Justin Lemkul
    • [gmx-users] interaction potential parameters Between H2O And CO2   Vitaly V. Chaban
    • [gmx-users] interaction potential parameters Between H2O And CO2   Zhongjin He
      • [gmx-users] interaction potential parameters Between H2O And CO2   Justin Lemkul
• [gmx-users] 回复：Re: interaction potential parameters Between H2O And CO2   hzj1000
  • [gmx-users] 回复：Re: interaction potential parameters Between H2O And CO2   Justin Lemkul
  • [gmx-users] interaction potential parameters Between H2O And CO2   Vitaly V. Chaban
    • [gmx-users] interaction potential parameters Between H2O And CO2   hzj1000 at 163.com
• [gmx-users] hi   Idriz Seferi
  • [gmx-users] hi   Idriz Seferi
    • [gmx-users] hi   Barnett, James W
  • [gmx-users] hi   Justin Lemkul
• [gmx-users] ENVIRONMENT VARIABLES   Sana Saeed
• [gmx-users] calculating total percentage of time from gibbs free energy landscape   Naba
• [gmx-users] syntax for gmx distance   Nash, Anthony
  • [gmx-users] syntax for gmx distance   Justin Lemkul
    • [gmx-users] syntax for gmx distance   Nash, Anthony
    • [gmx-users] syntax for gmx distance   Nash, Anthony
      • [gmx-users] syntax for gmx distance   Justin Lemkul
      • [gmx-users] syntax for gmx distance   Nash, Anthony
      • [gmx-users] syntax for gmx distance   Justin Lemkul
      • [gmx-users] syntax for gmx distance   Nash, Anthony
  • [gmx-users] syntax for gmx distance   Teemu Murtola
    • [gmx-users] syntax for gmx distance   Nash, Anthony
      • [gmx-users] syntax for gmx distance   Nash, Anthony
• [gmx-users] grompp error   faride badalkhani
  • [gmx-users] grompp error   Justin Lemkul
• [gmx-users] change the orientation of hydrogen atoms   Stefania Evoli
• [gmx-users] amber99bsc0 force field   Andrew Bostick
  • [gmx-users] amber99bsc0 force field   Piggot T.
  • [gmx-users] amber99bsc0 force field   Justin Lemkul
• [gmx-users] problem implementing REST2 in GROMACS 4.6.5   Elio Fiorentini
  • [gmx-users] problem implementing REST2 in GROMACS 4.6.5   Mark Abraham
    • [gmx-users] problem implementing REST2 in GROMACS 4.6.5   Elio Fiorentini
      • [gmx-users] problem implementing REST2 in GROMACS 4.6.5   Mark Abraham
      • [gmx-users] problem implementing REST2 in GROMACS 4.6.5   Elio Fiorentini
• [gmx-users] GROMACS 5 paper, out now!   Mark Abraham
• [gmx-users] Using TIP4P(2005) with GROMOS-53a6   Pallavi Banerjee
  • [gmx-users] Using TIP4P(2005) with GROMOS-53a6   Smith, Micholas D.
    • [gmx-users] Using TIP4P(2005) with GROMOS-53a6   Catarina A. Carvalheda dos Santos
• [gmx-users] Using TIP4P(2005) with GROMOS-53a6   Pallavi Banerjee
  • [gmx-users] Using TIP4P(2005) with GROMOS-53a6   Justin Lemkul
    • [gmx-users] Using TIP4P(2005) with GROMOS-53a6   João M. Damas
• [gmx-users] Lowering Torsional barrier for conformational sampling   Arjun Kalra
  • [gmx-users] Lowering Torsional barrier for conformational sampling   Mark Abraham
• [gmx-users] Fixing periodicity effects on trajectory file   Homa rooz
  • [gmx-users] Fixing periodicity effects on trajectory file   Justin Lemkul
• [gmx-users] Accelerating data analysis.   Dawid das
  • [gmx-users] Accelerating data analysis.   Justin Lemkul
  • [gmx-users] Accelerating data analysis.   Erik Marklund
    • [gmx-users] Accelerating data analysis.   Dawid das
      • [gmx-users] Accelerating data analysis.   Dawid das
      • [gmx-users] Accelerating data analysis.   Mark Abraham
      • [gmx-users] Accelerating data analysis.   Dawid das
      • [gmx-users] Accelerating data analysis.   Erik Marklund
    • [gmx-users] Accelerating data analysis.   Krzysztof Kuczera
      • [gmx-users] Accelerating data analysis.   Dawid das
• [gmx-users] Using TIP4P(2005) with GROMOS-53a6   Pallavi Banerjee
• [gmx-users] how to install GROMOS 43a1p force field in gromacs 4.5.5 version   rajan kumar choudhary
  • [gmx-users] how to install GROMOS 43a1p force field in gromacs 4.5.5 version   Justin Lemkul
• [gmx-users] Fixing periodicity effects on trajectory file   Homa rooz
  • [gmx-users] Fixing periodicity effects on trajectory file   Justin Lemkul
  • [gmx-users] Fixing periodicity effects on trajectory file   Michael Shirts
• [gmx-users] Efficiently running multiple simulations   Zimmerman, Maxwell
  • [gmx-users] Efficiently running multiple simulations   Mark Abraham
    • [gmx-users] Efficiently running multiple simulations   Zimmerman, Maxwell
      • [gmx-users] Efficiently running multiple simulations   Mark Abraham
      • [gmx-users] Efficiently running multiple simulations   Zimmerman, Maxwell
      • [gmx-users] Efficiently running multiple simulations   Mark Abraham
      • [gmx-users] Efficiently running multiple simulations   Zimmerman, Maxwell
      • [gmx-users] Efficiently running multiple simulations   Mark Abraham
      • [gmx-users] Efficiently running multiple simulations   Zimmerman, Maxwell
      • [gmx-users] Efficiently running multiple simulations   Mark Abraham
      • [gmx-users] Efficiently running multiple simulations   Zimmerman, Maxwell
• [gmx-users] gmx dipoles with dynamic indices (gromacs 5.0.x)   Daskalakis Vangelis
  • [gmx-users] gmx dipoles with dynamic indices (gromacs 5.0.x)   Justin Lemkul
    • [gmx-users] gmx dipoles with dynamic indices (gromacs 5.0.x)   Daskalakis Vangelis
• [gmx-users] Problem with wall!   mahi heyran
• [gmx-users] Atomic charges   Pallavi Banerjee
  • [gmx-users] Atomic charges   Chandan Choudhury
  • [gmx-users] Atomic charges   Justin Lemkul
• [gmx-users] Fixing periodicity effects on trajectory file   Homa rooz
  • [gmx-users] Fixing periodicity effects on trajectory file   Justin Lemkul
• [gmx-users] H-bond calculation   RJ
  • [gmx-users] H-bond calculation   Erik Marklund
    • [gmx-users] H-bond calculation   Justin Lemkul
• [gmx-users] Atomic charges   Pallavi Banerjee
• [gmx-users] gromacs-5.1 installation error   Brett
  • [gmx-users] gromacs-5.1 installation error   Mark Abraham
• [gmx-users] Problem in running CPMD with gmx-3.3.1   Padmani Sandhu
  • [gmx-users] Problem in running CPMD with gmx-3.3.1   Mark Abraham
• [gmx-users] Problem with gmx-distance   Timofey Tyugashev
  • [gmx-users] Problem with gmx-distance   Justin Lemkul
    • [gmx-users] Problem with gmx-distance   Teemu Murtola
• [gmx-users] g_traj + g_analyze and core dumped error   gozde ergin
  • [gmx-users] g_traj + g_analyze and core dumped error   gozde ergin
    • [gmx-users] g_traj + g_analyze and core dumped error   Justin Lemkul
      • [gmx-users] g_traj + g_analyze and core dumped error   gozde ergin
• [gmx-users] GMX 5.0.6 on nodes with gpus   devapriyachem at gmail.com
  • [gmx-users] GMX 5.0.6 on nodes with gpus   Mark Abraham
    • [gmx-users] GMX 5.0.6 on nodes with gpus   Deva P.
• [gmx-users] Electric double layer, how to add charge   Andreas
  • [gmx-users] Electric double layer, how to add charge   André Farias de Moura
    • [gmx-users] Electric double layer, how to add charge   Andreas
      • [gmx-users] Electric double layer, how to add charge   Andreas
      • [gmx-users] Electric double layer, how to add charge   André Farias de Moura
• [gmx-users] GPU-accelerated desktop PC for MD simulations   Gustavo Avelar Molina
  • [gmx-users] GPU-accelerated desktop PC for MD simulations   Szilárd Páll
  • [gmx-users] GPU-accelerated desktop PC for MD simulations   Justin Lemkul
• [gmx-users] on CHARMM-GUI produced lipid bilayer for gromacs use   Brett
  • [gmx-users] on CHARMM-GUI produced lipid bilayer for gromacs use   Tsjerk Wassenaar
• [gmx-users] -rdd and -ddcheck   Sana Saeed
• [gmx-users] Atomic charges   Pallavi Banerjee
  • [gmx-users] Atomic charges   M.Cristina Donnamaria
• [gmx-users] g_mmpbsa time   elham tazikeh
• [gmx-users] MD with DNA double strand   Amali Guruge
  • [gmx-users] MD with DNA double strand   Justin Lemkul
• [gmx-users] Fw:Re: on CHARMM-GUI produced lipid bilayer for gromacs use   Tsjerk Wassenaar
• [gmx-users] Problem with wall!   mahi heyran
• [gmx-users] Choose index group from terminal input.   Dawid das
  • [gmx-users] Choose index group from terminal input.   Dawid das
    • [gmx-users] Choose index group from terminal input.   Mark Abraham
      • [gmx-users] Choose index group from terminal input.   Dawid das
• [gmx-users] energygrps interactions are 0 for water   Julian Michalowsky
  • [gmx-users] energygrps interactions are 0 for water   Mark Abraham
• [gmx-users] GPU suggestions   Eric Smoll
  • [gmx-users] GPU suggestions   Mark Abraham
• [gmx-users] New atom definition   Maryam Kowsar
  • [gmx-users] New atom definition   Justin Lemkul
    • [gmx-users] New atom definition   Maryam Kowsar
      • [gmx-users] New atom definition   Justin Lemkul
• [gmx-users] Efficiently running multiple simulations   Mark Abraham
• [gmx-users] REMD and distance restraints problem in gmx 4.6.7   Christopher Neale
  • [gmx-users] REMD and distance restraints problem in gmx 4.6.7   Mark Abraham
    • [gmx-users] REMD and distance restraints problem in gmx 4.6.7   Christopher Neale
• [gmx-users] Custom elastic network of a membrane protein   Yasser Almeida Hernández
• [gmx-users] Running two separate mdrun instances on a single workstation   Deva Priya
  • [gmx-users] Running two separate mdrun instances on a single workstation   Szilárd Páll
• [gmx-users] (no subject)   ANAND AMITKUMAR Dharia
  • [gmx-users] (no subject)   Justin Lemkul
• [gmx-users] Clustering of Molecules Gromacs   ANAND AMITKUMAR Dharia
  • [gmx-users] Clustering of Molecules Gromacs   Justin Lemkul
• [gmx-users] Solvating in a solvent other than water   Pallavi Banerjee
  • [gmx-users] Solvating in a solvent other than water   Justin Lemkul
    • [gmx-users] Solvating in a solvent other than water   Vitaly V. Chaban
• [gmx-users] Halothane rtp and pdb file   Poncho Arvayo Zatarain
  • [gmx-users] Halothane rtp and pdb file   Justin Lemkul
• [gmx-users] trjcat   elham tazikeh
  • [gmx-users] trjcat   Ullmann, Thomas
• [gmx-users] initial structure generation for performing MD simulations   soumadwip ghosh
  • [gmx-users] initial structure generation for performing MD simulations   Tsjerk Wassenaar
• [gmx-users] GPU+CPU   Parker de Waal
• [gmx-users] trjcat   elham tazikeh
  • [gmx-users] trjcat   Justin Lemkul
• [gmx-users] Solvating in a solvent other than water   Pallavi Banerjee
  • [gmx-users] Solvating in a solvent other than water   Justin Lemkul
    • [gmx-users] Solvating in a solvent other than water   Jarvist Moore Frost
• [gmx-users] Gibbs free energy landscape Vs. the stability of protein structure   Naba
  • [gmx-users] Gibbs free energy landscape Vs. the stability of protein structure   Justin Lemkul
    • [gmx-users] Gibbs free energy landscape Vs. the stability of protein structure   Naba
      • [gmx-users] Gibbs free energy landscape Vs. the stability of protein structure   David van der Spoel
      • [gmx-users] Gibbs free energy landscape Vs. the stability of protein structure   Naba
• [gmx-users] addition of hydronium ion in simulation box   Padmani Sandhu
  • [gmx-users] addition of hydronium ion in simulation box   Justin Lemkul
• [gmx-users] g_mmpbsa   leila karami
  • [gmx-users] g_mmpbsa   M.Cristina Donnamaria
• [gmx-users] Invalid order for directive atomtypes   Daniele Veclani
  • [gmx-users] Invalid order for directive atomtypes   Justin Lemkul
    • [gmx-users] Invalid order for directive atomtypes   Daniele Veclani
      • [gmx-users] Invalid order for directive atomtypes   Justin Lemkul
      • [gmx-users] Invalid order for directive atomtypes   Daniele Veclani
      • [gmx-users] Invalid order for directive atomtypes   Justin Lemkul
• [gmx-users] simulating Cellulose using GAFF force field   Fahimeh
  • [gmx-users] simulating Cellulose using GAFF force field   Vitaly V. Chaban
• [gmx-users] Prospective research areas of GROMACS   Sabyasachi Sahoo
  • [gmx-users] Prospective research areas of GROMACS   David van der Spoel
    • [gmx-users] Prospective research areas of GROMACS   Sabyasachi Sahoo
  • [gmx-users] Prospective research areas of GROMACS   Mark Abraham
    • [gmx-users] Prospective research areas of GROMACS   Sabyasachi Sahoo
      • [gmx-users] GROMACS with AMBER heme parameters   Ebert Maximilian
      • [gmx-users] GROMACS with AMBER heme parameters   Justin Lemkul
      • [gmx-users] GROMACS with AMBER heme parameters   Ebert Maximilian
      • [gmx-users] GROMACS with AMBER heme parameters   Justin Lemkul
      • [gmx-users] GROMACS with AMBER heme parameters   Ebert Maximilian
      • [gmx-users] GROMACS with AMBER heme parameters   Justin Lemkul
      • [gmx-users] GROMACS with AMBER heme parameters   Ebert Maximilian
      • [gmx-users] GROMACS with AMBER heme parameters   Ebert Maximilian
• [gmx-users] Gibbs free energy landscape Vs. the stability of protein structure   Padmani Sandhu
  • [gmx-users] Gibbs free energy landscape Vs. the stability of protein structure   Padmani Sandhu
• [gmx-users] addition of hydronium ion in simulation box   Padmani Sandhu
  • [gmx-users] addition of hydronium ion in simulation box   Justin Lemkul
  • [gmx-users] addition of hydronium ion in simulation box   André Farias de Moura
    • [gmx-users] addition of hydronium ion in simulation box   André Farias de Moura
• [gmx-users] force fields selection   James Lord
  • [gmx-users] force fields selection   Justin Lemkul
    • [gmx-users] force fields selection   James Lord
    • [gmx-users] force fields selection   Antonio Baptista
      • [gmx-users] force fields selection   James Lord
• [gmx-users] addition of hydronium ion in simulation box   Padmani Sandhu
• [gmx-users] g_mmpbsa   leila karami
• [gmx-users] To calculate temperture of the specific molecules after simulation.   Krishna Mohan Gupta
• [gmx-users] To calculate temperture in a specific region   Krishna Mohan Gupta
• [gmx-users] addition of hydronium ion in simulation box   Groenhof, Gerrit
  • [gmx-users] addition of hydronium ion in simulation box   Catarina A. Carvalheda dos Santos
• [gmx-users] To calculate temperture in a specific region   Krishna Mohan Gupta
  • [gmx-users] To calculate temperture in a specific region   Mark Abraham
    • [gmx-users] To calculate temperture in a specific region   Krishna Mohan Gupta
      • [gmx-users] To calculate temperture in a specific region   Mark Abraham
• [gmx-users] What's the practical effect of 'continuation = yes/no'?   Trayder Thomas
  • [gmx-users] What's the practical effect of 'continuation = yes/no'?   Mark Abraham
• [gmx-users] Solvating in a solvent other than water   Pallavi Banerjee
• [gmx-users] Free energy perturbation with hamiltonian replica exchange (FEP - HEX)   Julian
  • [gmx-users] Free energy perturbation with hamiltonian replica exchange (FEP - HEX)   Julian
• [gmx-users] SDF problem   Daniele Veclani
  • [gmx-users] SDF problem   Justin Lemkul
• [gmx-users] backward.py script   Juan Munoz-Garcia
  • [gmx-users] backward.py script   Tsjerk Wassenaar
• [gmx-users] distance dependent energy   Cuong Nguyen
  • [gmx-users] distance dependent energy   Erik Marklund
  • [gmx-users] distance dependent energy   Mark Abraham
• [gmx-users] Crystallographic Ions   Parker de Waal
  • [gmx-users] Crystallographic Ions   Justin Lemkul
• [gmx-users] PMF calculation_ Constraint   Sepideh Kavousi
  • [gmx-users] PMF calculation_ Constraint   Justin Lemkul
    • [gmx-users] PMF calculation_ Constraint   Sepideh Kavousi
      • [gmx-users] PMF calculation_ Constraint   Justin Lemkul
• [gmx-users] Fwd: Diffusion of protein   neha bharti
• [gmx-users] pressure and temperature coupling is off in vacuum simulations   tasneem kausar
  • [gmx-users] pressure and temperature coupling is off in vacuum simulations   Mark Abraham
    • [gmx-users] pressure and temperature coupling is off in vacuum simulations   Erik Marklund
      • [gmx-users] pressure and temperature coupling is off in vacuum simulations   Mark Abraham
      • [gmx-users] pressure and temperature coupling is off in vacuum simulations   Justin Lemkul
      • [gmx-users] pressure and temperature coupling is off in vacuum simulations   aghaei.arsalan
      • [gmx-users] pressure and temperature coupling is off in vacuum simulations   Justin Lemkul
      • [gmx-users] pressure and temperature coupling is off in vacuum simulations   Erik Marklund
      • [gmx-users] pressure and temperature coupling is off in vacuum simulations   Erik Marklund
• [gmx-users] To calculate temperture in a specific region   Krishna Mohan Gupta
• [gmx-users] NPT with implicit solvent   Sana Saeed
  • [gmx-users] NPT with implicit solvent   Justin Lemkul
• [gmx-users] Martini domain decomposition problem   Gábor Balogh
• [gmx-users] mdp files   Yasser Almeida Hernández
• [gmx-users] COM motion removal   Parvez Mh
  • [gmx-users] COM motion removal   Justin Lemkul
• [gmx-users] peptide lipid simulation   badamkhatan togoldor
  • [gmx-users] peptide lipid simulation   Justin Lemkul
• [gmx-users] peptide, lipid simulation   badamkhatan togoldor
• [gmx-users] No domain decomposition   soumadwip ghosh
• [gmx-users] No domain decomposition   soumadwip ghosh
  • [gmx-users] No domain decomposition   Tsjerk Wassenaar
• [gmx-users] 1. peptide, lipid simulation (badamkhatan togoldor)   Theoretical Research
• [gmx-users] No domain decomposition   soumadwip ghosh
  • [gmx-users] No domain decomposition   Justin Lemkul
• [gmx-users] peptide lipid simulation   Justin Lemkul
• [gmx-users] Regarding gmx-user mailing list thread "Gibbs free energy landscape Vs. the stability of protein structure"   David van der Spoel
  • [gmx-users] Regarding gmx-user mailing list thread "Gibbs free energy landscape Vs. the stability of protein structure"   Naba
• [gmx-users] No domain decomposition   soumadwip ghosh
  • [gmx-users] No domain decomposition   Mark Abraham
• [gmx-users] peptide lipid simulation   Justin Lemkul
• [gmx-users] no domain decomposition   soumadwip ghosh
  • [gmx-users] no domain decomposition   Justin Lemkul
    • [gmx-users] no domain decomposition   Tsjerk Wassenaar
• [gmx-users] Amber to GROMACS structure/topology   Gustavo Avelar Molina
  • [gmx-users] Amber to GROMACS structure/topology   Michael Shirts
• [gmx-users] Optimize the cut-off distance and fourierspacing   Vy Phan
  • [gmx-users] Optimize the cut-off distance and fourierspacing   Mark Abraham
• [gmx-users] gmx rdf gromacs 5.1 question!   Stelios Karozis
  • [gmx-users] gmx rdf gromacs 5.1 question!   Teemu Murtola
    • [gmx-users] gmx rdf gromacs 5.1 question!   Stelios Karozis
      • [gmx-users] gmx rdf gromacs 5.1 question!   Teemu Murtola
      • [gmx-users] gmx rdf gromacs 5.1 question!   Stelios Karozis
• [gmx-users] gromacs 5.0.5 install   신은혜
  • [gmx-users] gromacs 5.0.5 install   Mark Abraham
• [gmx-users] PTR is not found in residue topology database   Amali Guruge
  • [gmx-users] PTR is not found in residue topology database   Justin Lemkul
• [gmx-users] Analysis of old xtc file using gromacs-5 tools   Venkat Reddy
  • [gmx-users] Analysis of old xtc file using gromacs-5 tools   Tsjerk Wassenaar
    • [gmx-users] Analysis of old xtc file using gromacs-5 tools   Venkat Reddy
      • [gmx-users] Analysis of old xtc file using gromacs-5 tools   Teemu Murtola
      • [gmx-users] Analysis of old xtc file using gromacs-5 tools   Teemu Murtola
      • [gmx-users] Analysis of old xtc file using gromacs-5 tools   Venkat Reddy
      • [gmx-users] Analysis of old xtc file using gromacs-5 tools   Teemu Murtola
      • [gmx-users] Analysis of old xtc file using gromacs-5 tools   Venkat Reddy
      • [gmx-users] Analysis of old xtc file using gromacs-5 tools   Teemu Murtola
• [gmx-users] Gromacs says that may GeForce 9800gt is incompatible any help?   Juliano Braz Carregal
  • [gmx-users] Gromacs says that may GeForce 9800gt is incompatible any help?   Repic Matej
• [gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 137   Juliano Braz Carregal
  • [gmx-users] Gromacs says that may GeForce 9800gt is incompatible any, help?   Justin Lemkul
• [gmx-users] bonded forces in output   Stanislav Šimko
  • [gmx-users] bonded forces in output   Justin Lemkul
• [gmx-users] Installation problem   Parham Jabbarzadeh (Department of Biomedical Science)
• [gmx-users] Restart simulation after crash   Juliano Braz Carregal
  • [gmx-users] Restart simulation after crash   Justin Lemkul
• [gmx-users] Topology for ligands   Juliano Braz Carregal
  • [gmx-users] Topology for ligands   Ebert Maximilian
• [gmx-users] apparent shear rate vs. shear stress using cos_acceleration function in Gromacs   Subas Dhakal
• [gmx-users] Atom OXT in PHE   Amali Guruge
  • [gmx-users] Atom OXT in PHE   Sepideh Kavousi
• [gmx-users] maestro cms file to gromacs   Chetan Puri
  • [gmx-users] maestro cms file to gromacs   Parker de Waal
  • [gmx-users] maestro cms file to gromacs   Smith, Micholas D.
• [gmx-users] no domain decomposition   soumadwip ghosh
  • [gmx-users] no domain decomposition   Chandan Choudhury
• [gmx-users] swissparm .itp problems   Parker de Waal
• [gmx-users] CNT in water   maryam haji
  • [gmx-users] CNT in water   Vitaly V. Chaban
  • [gmx-users] CNT in water   Justin Lemkul
• [gmx-users] frequent stop of GPU jobs at specific simulation steps.   Zhongjin He
• [gmx-users] swissparm .itp problems   soumadwip ghosh
• [gmx-users] Gromacs GPU got hang   M Teguh Satria
• [gmx-users] No domain decomposition   soumadwip ghosh
  • [gmx-users] No domain decomposition   Chandan Choudhury
    • [gmx-users] No domain decomposition   Justin Lemkul
• [gmx-users] adding walls? to EDL simulation?   Andreas
  • [gmx-users] adding walls? to EDL simulation?   Andreas
• [gmx-users] File input/output error   Sabyasachi Sahoo
• [gmx-users] question   Andrew Bostick
• [gmx-users] question   Andrew Bostick
  • [gmx-users] question   Justin Lemkul
• [gmx-users] Excessive memory usage of mdrun   mpignata at bidmc.harvard.edu
• [gmx-users] question   Andrew Bostick
  • [gmx-users] question   Justin Lemkul
• [gmx-users] Fw: question about kalp15 in dppc justin tutorial   ‪neda razavi‬ ‪
  • [gmx-users] Fw: question about kalp15 in dppc justin tutorial   Justin Lemkul
• [gmx-users] Fw: problem with kalp in dppc simulation justin tutorial   ‪neda razavi‬ ‪
  • [gmx-users] Fw: problem with kalp in dppc simulation justin tutorial   Justin Lemkul
• [gmx-users] Fw: question about kalp15 simulation in dppc   ‪neda razavi‬ ‪
  • [gmx-users] Fw: question about kalp15 simulation in dppc   Justin Lemkul
• [gmx-users] (no subject)   ‪neda razavi‬ ‪
• [gmx-users] (no subject)   ‪neda razavi‬ ‪
• [gmx-users] Error on doing restart   Juliano Braz Carregal
• [gmx-users] Error on doing a restart   Juliano Braz Carregal
• [gmx-users] REMD system blowing up   NISHA Prakash
• [gmx-users] Error in gromacs-5.1 installation   Venkat Reddy
• [gmx-users] Free energy in octanol and water   Gmx QA
  • [gmx-users] Free energy in octanol and water   Justin Lemkul
    • [gmx-users] Free energy in octanol and water   Gmx QA
      • [gmx-users] Free energy in octanol and water   Justin Lemkul
• [gmx-users] Hybrid acceleration with "well-tempered parallel tempering metadynamics"   Francesco Carbone
• [gmx-users] g_covar error in Gromacs 5   Rebeca García Fandiño
  • [gmx-users] g_covar error in Gromacs 5   Justin Lemkul
• [gmx-users] Pausing and resuming mdrun   Andrew DeYoung
  • [gmx-users] Pausing and resuming mdrun   Szilárd Páll
• [gmx-users] Pausing and resuming mdrun   Andrew DeYoung
• [gmx-users] Gromacs GPU got hang   M Teguh Satria
  • [gmx-users] Gromacs GPU got hang   Téletchéa Stéphane
• [gmx-users] Barostat Selection   Parker de Waal
  • [gmx-users] Barostat Selection   Justin Lemkul
    • [gmx-users] Barostat Selection   Parker de Waal
      • [gmx-users] Barostat Selection   Justin Lemkul
• [gmx-users] mutating the protein   Raag Saluja
  • [gmx-users] mutating the protein   Repic Matej
    • [gmx-users] mutating the protein   Catarina A. Carvalheda dos Santos
• [gmx-users] bond, angles and dihedrals in the topology file   faride badalkhani
  • [gmx-users] bond, angles and dihedrals in the topology file   Justin Lemkul
    • [gmx-users] bond, angles and dihedrals in the topology file   faride badalkhani
      • [gmx-users] bond, angles and dihedrals in the topology file   Justin Lemkul
      • [gmx-users] bond, angles and dihedrals in the topology file   faride badalkhani
      • [gmx-users] bond, angles and dihedrals in the topology file   Chandan Choudhury
      • [gmx-users] bond, angles and dihedrals in the topology file   faride badalkhani
• [gmx-users] gromacs.org_gmx-users Digest, Vol 137, Issue 154   Raag Saluja
  • [gmx-users] Insert molecules in system with minimum distance between them   Ebert Maximilian
• [gmx-users] gmx distance lipid bilayer   xy21hb
  • [gmx-users] gmx distance lipid bilayer   Justin Lemkul
    • [gmx-users] gmx distance lipid bilayer   xy21hb
    • [gmx-users] gmx distance lipid bilayer   Repic Matej
• [gmx-users] gmx distance lipid bilayer   xy21hb
• [gmx-users] Fw: gmx distance lipid bilayer   xy21hb
• [gmx-users] Converting Amber frcmod and mol2 files to Gromacs   Simon Dürr
  • [gmx-users] Converting Amber frcmod and mol2 files to Gromacs   Michael Shirts
    • [gmx-users] Converting Amber frcmod and mol2 files to Gromacs   Simon Dürr
• [gmx-users] Simulations of proteins in membrane bilayer   凌未风

Last message date: Wed Sep 30 22:48:41 CEST 2015
Archived on: Wed Sep 30 22:48:42 CEST 2015

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