[gmx-users] g_hbond

Shahid Nayeem msnayeem at gmail.com
Fri Sep 11 08:43:16 CEST 2015

Dear all
I have used g_hbond with -hbn -hbm flag to get .ndx file and .xpm file.
Then with xpm2ps I converted .xpm to .eps file. I get half the number of
rows in .eps file as compared to .ndx file. when using Justins perl script
I got summary of existence file and here 12 bonds are shown but in .eps
file only 6 rows are plotted. I know that the bonds are plotted in reverse
order but here only half number of bonds are plotted in .eps file. please
help to resolve this issue.

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