[gmx-users] struggles with cyclic peptides
Nikhil
scinikhil at gmail.com
Sun Sep 13 19:45:49 CEST 2015
Thank you very much Justine,
now it making bond between first and last residue of amino acids but there
as an extra oxygen atom is coming when i select any option other than
None.but when i select None for the second terminals it shows an error
as
There is a dangling bond at at least one of the terminal ends. Fix
yourcoordinate file, add a new terminal database entry (.tdb), or select
the
proper existing terminal entry.**For more information and tips for
troubleshooting, please check the GROMACS*
should i edit the .tdb file ?
thanks in advance
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